Click here to switch to the map view.

The map label for this gene is 52842656

Identifier: 52842656

GI number: 52842656

Start: 2760549

End: 2760986

Strand: Reverse

Name: 52842656

Synonym: lpg2448

Alternate gene names: NA

Gene position: 2760986-2760549 (Counterclockwise)

Preceding gene: 52842659

Following gene: 52842653

Centisome position: 81.26

GC content: 37.67

Gene sequence:

>438_bases
ATGAAAACAATTGAAGCCATTGGTAAATCGGTCGCTGGCAATACAACAAAGATCCATATGGCTGTGGATGCCTTTGGTTT
TCCAATTTCATTTCAGTTGATTTGCGGTGAAGTACATGATGCTAAAGCTGCACCGGACTTAATCAGCTCTTTACCGATAG
CAACTTATACTATTGCGGACAAAGGTTATGACAGCGAAGAAATTCGAGAACAAATTAAGCAAAAATCTCCCATTCCAATT
ATCCCCAGAAAGAAAAACTCTAAAACAGGTAATGCTGAAGTTGATTGGGGTTTATATAAATATCGTCACCTAGTTGAAAA
TATATTTGCCAGACTTAAACAGTTTCGTGCTATTGCAACAAGGTACGATAAGTTAAAACGGAATTATGCTTCAACGCTAG
CAATGGCACCCTATATGTTGGCTCAACATCTGATTTAA

Upstream 100 bases:

>100_bases
GAATAAGTGTGTAATTGATTGATAAATAAGAGTAAACTCGTATTATAACGGTTCTAACCCCAAGTACAAAACGAGCTTGC
AATGCTTAGACTTATGCTCA

Downstream 100 bases:

>100_bases
TTAAGTGGGTCTGGGAGCACAAAAATAAAGTGATTCCAGGGTTTACAGCACGGTATAATGTACATATCTTGGTCTATTAT
GAAGTGCATGAAACGTACAT

Product: transposase, ISSod6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MKTIEAIGKSVAGNTTKIHMAVDAFGFPISFQLICGEVHDAKAAPDLISSLPIATYTIADKGYDSEEIREQIKQKSPIPI
IPRKKNSKTGNAEVDWGLYKYRHLVENIFARLKQFRAIATRYDKLKRNYASTLAMAPYMLAQHLI

Sequences:

>Translated_145_residues
MKTIEAIGKSVAGNTTKIHMAVDAFGFPISFQLICGEVHDAKAAPDLISSLPIATYTIADKGYDSEEIREQIKQKSPIPI
IPRKKNSKTGNAEVDWGLYKYRHLVENIFARLKQFRAIATRYDKLKRNYASTLAMAPYMLAQHLI
>Mature_145_residues
MKTIEAIGKSVAGNTTKIHMAVDAFGFPISFQLICGEVHDAKAAPDLISSLPIATYTIADKGYDSEEIREQIKQKSPIPI
IPRKKNSKTGNAEVDWGLYKYRHLVENIFARLKQFRAIATRYDKLKRNYASTLAMAPYMLAQHLI

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002559 [H]

Pfam domain/function: PF01609 Transposase_11 [H]

EC number: NA

Molecular weight: Translated: 16298; Mature: 16298

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTIEAIGKSVAGNTTKIHMAVDAFGFPISFQLICGEVHDAKAAPDLISSLPIATYTIAD
CCCHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEECCHHCCCCCHHHHHHCCCCEEEECC
KGYDSEEIREQIKQKSPIPIIPRKKNSKTGNAEVDWGLYKYRHLVENIFARLKQFRAIAT
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RYDKLKRNYASTLAMAPYMLAQHLI
HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKTIEAIGKSVAGNTTKIHMAVDAFGFPISFQLICGEVHDAKAAPDLISSLPIATYTIAD
CCCHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEECCHHCCCCCHHHHHHCCCCEEEECC
KGYDSEEIREQIKQKSPIPIIPRKKNSKTGNAEVDWGLYKYRHLVENIFARLKQFRAIAT
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RYDKLKRNYASTLAMAPYMLAQHLI
HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8126444 [H]