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The map label for this gene is 52842575

Identifier: 52842575

GI number: 52842575

Start: 2670946

End: 2672697

Strand: Reverse

Name: 52842575

Synonym: lpg2366

Alternate gene names: NA

Gene position: 2672697-2670946 (Counterclockwise)

Preceding gene: 52842576

Following gene: 52842574

Centisome position: 78.66

GC content: 47.09

Gene sequence:

>1752_bases
ATGTCACAAAATCATGTTATTGAATTAGCCAATACACTAAAGCAGCGTCCAATTGTATGCGACTATACCGGTGGTCGTTT
TCGGTTAACTAATGAGGGGCTAACTTATATCGGTATTGATAGGGATGGCACTCCTTTACCACCTCGGTGGATATGTGCAC
CATTGCATATCGTTGCCAAAACCCGAGATGCTCAGAGCGGTGAGTGGGGTCGTTTGCTGGAATGGCAAGATGATGATGGG
ATAACTCATCAGTGGGCGATGCCATTGGCTTTATTGCAGGGTGATGCCTCCGATGTAAGGCGAGAGCTGGCAAGATTAGG
ATTGAGTATTTCACCTCATAGAACTGCTCGTGATTTGTTAGCCTCCTATTTACAAGTCTTTCCAGTAGACGCACGTGCAA
GATGCGTTGATAAACTGGGTTGGCATGGCGATGTCTTTGTAACCGCTTCCCAATGTATCGGGCAATCAACAGAGAAGATT
GTCTTCCAAAATACCAATGCCATTGAACCGGCAATGTCCATCAAAGGCAGCGTTGATAAATGGCGAGATTCAATAGGTCG
TCTGGCTTCCGGCAACTCAAGATTGGTATTTGCCATCTCGGTAGCACTTGCTCCAGTTCTAGCAAAGATTGTTGGTGAAG
ACTCAGGAGGCTTTCATTTCAGAGGTGCATCCTCATCAGGTAAAAGCACTGCATTGAGTCTGGCTGCCTCTGTTTGGGGA
AACCCACAATCTTATTGCCGTTTATGGCGCAGCACTACCAATGGGCTTGAAGGCTTAGCCGCATTGCATAATGACGGCTT
GCTGATTCTTGATGAACTTAGTCAAATGGATCCTAGAGAAGCAGGGGAGGCAGCTTATTTACTGGCCAATGGTCAGGGAA
AAACACGTGCCTCTCGTACTGGCACAGTCAGGCAATCTTCTCGATGGTCTTTATTTTTCTTATCTGCTGGTGAAGAGTCC
TTGACGGCACTCATGGCAAAATCAGGACAACGCATTAATGCAGGTCAGGAAATCAGGCTTGCTGATATTGAGGCGGATGC
TGGCTGTCAGATGGGGATCTTTGAAACGATTCATGATCAGCTCAGTCCAGCTAGCATGGCCTTATCGCTCAAGAAGTACA
GCAGCGGATATCATGGCGCAATCGGCAGGGCGTGGCTAAATCAAGTGGTTGCTAACCGGCAAACAATCAGTCGATTCATT
ACCGACACCATTCAATCTTTTGTTGATATCGTCATTCAGCCTGATGCAACAGGCCAGATTATCCGTGTTGCCAGACGCTT
TGCACTGGTTGCTGCTGCGGGAGAATTGGCCAGTCAATTTGGTCTGACAGGATGGAAAAAAGGCGAATCTTTCCATGCTG
CGAAGACTTGTTTCATTGCATGGCAGGATGCTTTTGGAGTTGATGGCCACCGCGAAGATCGCGCCATTATGGCGCAGGTA
CGCGCTTTCTTTGAATCCCATGGTGCCAGCCGATTTGATAATGTCAACTCACCCAACAATGACAAGATTCTCAATCGCGC
AGGATTTTATCATACAGATGGCGAAGGGTTTAGAATCTACATGGTGTTAACCGAGACGTACAAAAATGAGTTATGCAAAG
GCTTTGATCAACGCACCGTGACAAGGGTTTTATTACAAGCTGGCTGGCTGAAACCCGCCTCCGATGGCAAAGCCTCACAC
AAGCCAAGAATAAAGGGAGTTGGCACCCCAAGATTATATGTTTTTACCGGTAAGATTTGGGGAGGTGAATAA

Upstream 100 bases:

>100_bases
ACGAAGGTCAGTTACAGCTCGTTGAGAACGCATAAATTTAGAATTAGTCAGAATGAATTGGATTCATTCCGATGGTTGAC
TGTTGTTTGGAGAATAATGT

Downstream 100 bases:

>100_bases
AATTGCCTATACCATCGGTTTTTACGTTGAGCACCGAAGGTGCGAATAAGGCTCGTGAAGTTTGGCAACCAGCTCGCTGG
TTAGCTAACTTCACCTATCT

Product: inner membrane protein

Products: NA

Alternate protein names: Prophage Primase; Superfamily II Helicase; DNA/RNA Helicase; DNA Helicase Inner Membrane Protein; Conserved Domain Protein; Inner Membrane; Zinc Finger CHC2-Family Protein; Primase C 2 Family; Bifunctional DNA Primase/Polymerase; Inner Membrane Protein Phage Origin; DNA Primase TraC

Number of amino acids: Translated: 583; Mature: 582

Protein sequence:

>583_residues
MSQNHVIELANTLKQRPIVCDYTGGRFRLTNEGLTYIGIDRDGTPLPPRWICAPLHIVAKTRDAQSGEWGRLLEWQDDDG
ITHQWAMPLALLQGDASDVRRELARLGLSISPHRTARDLLASYLQVFPVDARARCVDKLGWHGDVFVTASQCIGQSTEKI
VFQNTNAIEPAMSIKGSVDKWRDSIGRLASGNSRLVFAISVALAPVLAKIVGEDSGGFHFRGASSSGKSTALSLAASVWG
NPQSYCRLWRSTTNGLEGLAALHNDGLLILDELSQMDPREAGEAAYLLANGQGKTRASRTGTVRQSSRWSLFFLSAGEES
LTALMAKSGQRINAGQEIRLADIEADAGCQMGIFETIHDQLSPASMALSLKKYSSGYHGAIGRAWLNQVVANRQTISRFI
TDTIQSFVDIVIQPDATGQIIRVARRFALVAAAGELASQFGLTGWKKGESFHAAKTCFIAWQDAFGVDGHREDRAIMAQV
RAFFESHGASRFDNVNSPNNDKILNRAGFYHTDGEGFRIYMVLTETYKNELCKGFDQRTVTRVLLQAGWLKPASDGKASH
KPRIKGVGTPRLYVFTGKIWGGE

Sequences:

>Translated_583_residues
MSQNHVIELANTLKQRPIVCDYTGGRFRLTNEGLTYIGIDRDGTPLPPRWICAPLHIVAKTRDAQSGEWGRLLEWQDDDG
ITHQWAMPLALLQGDASDVRRELARLGLSISPHRTARDLLASYLQVFPVDARARCVDKLGWHGDVFVTASQCIGQSTEKI
VFQNTNAIEPAMSIKGSVDKWRDSIGRLASGNSRLVFAISVALAPVLAKIVGEDSGGFHFRGASSSGKSTALSLAASVWG
NPQSYCRLWRSTTNGLEGLAALHNDGLLILDELSQMDPREAGEAAYLLANGQGKTRASRTGTVRQSSRWSLFFLSAGEES
LTALMAKSGQRINAGQEIRLADIEADAGCQMGIFETIHDQLSPASMALSLKKYSSGYHGAIGRAWLNQVVANRQTISRFI
TDTIQSFVDIVIQPDATGQIIRVARRFALVAAAGELASQFGLTGWKKGESFHAAKTCFIAWQDAFGVDGHREDRAIMAQV
RAFFESHGASRFDNVNSPNNDKILNRAGFYHTDGEGFRIYMVLTETYKNELCKGFDQRTVTRVLLQAGWLKPASDGKASH
KPRIKGVGTPRLYVFTGKIWGGE
>Mature_582_residues
SQNHVIELANTLKQRPIVCDYTGGRFRLTNEGLTYIGIDRDGTPLPPRWICAPLHIVAKTRDAQSGEWGRLLEWQDDDGI
THQWAMPLALLQGDASDVRRELARLGLSISPHRTARDLLASYLQVFPVDARARCVDKLGWHGDVFVTASQCIGQSTEKIV
FQNTNAIEPAMSIKGSVDKWRDSIGRLASGNSRLVFAISVALAPVLAKIVGEDSGGFHFRGASSSGKSTALSLAASVWGN
PQSYCRLWRSTTNGLEGLAALHNDGLLILDELSQMDPREAGEAAYLLANGQGKTRASRTGTVRQSSRWSLFFLSAGEESL
TALMAKSGQRINAGQEIRLADIEADAGCQMGIFETIHDQLSPASMALSLKKYSSGYHGAIGRAWLNQVVANRQTISRFIT
DTIQSFVDIVIQPDATGQIIRVARRFALVAAAGELASQFGLTGWKKGESFHAAKTCFIAWQDAFGVDGHREDRAIMAQVR
AFFESHGASRFDNVNSPNNDKILNRAGFYHTDGEGFRIYMVLTETYKNELCKGFDQRTVTRVLLQAGWLKPASDGKASHK
PRIKGVGTPRLYVFTGKIWGGE

Specific function: Unknown

COG id: COG5519

COG function: function code L; Superfamily II helicase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63859; Mature: 63728

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQNHVIELANTLKQRPIVCDYTGGRFRLTNEGLTYIGIDRDGTPLPPRWICAPLHIVAK
CCCCHHHHHHHHHHHCCEEEEECCCEEEEECCCEEEEEECCCCCCCCCHHHHCCCEEEEE
TRDAQSGEWGRLLEWQDDDGITHQWAMPLALLQGDASDVRRELARLGLSISPHRTARDLL
CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHH
ASYLQVFPVDARARCVDKLGWHGDVFVTASQCIGQSTEKIVFQNTNAIEPAMSIKGSVDK
HHHHHHCCCCHHHHHHHHCCCCCCEEEEHHHHCCCCCCEEEEECCCCCCCHHHCCCCHHH
WRDSIGRLASGNSRLVFAISVALAPVLAKIVGEDSGGFHFRGASSSGKSTALSLAASVWG
HHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCC
NPQSYCRLWRSTTNGLEGLAALHNDGLLILDELSQMDPREAGEAAYLLANGQGKTRASRT
CHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEHHHCCCCCCCCCEEEEEECCCCCCCCCCC
GTVRQSSRWSLFFLSAGEESLTALMAKSGQRINAGQEIRLADIEADAGCQMGIFETIHDQ
CCCCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHH
LSPASMALSLKKYSSGYHGAIGRAWLNQVVANRQTISRFITDTIQSFVDIVIQPDATGQI
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHH
IRVARRFALVAAAGELASQFGLTGWKKGESFHAAKTCFIAWQDAFGVDGHREDRAIMAQV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEEEEEECCCCCCCCCCHHHHHHHH
RAFFESHGASRFDNVNSPNNDKILNRAGFYHTDGEGFRIYMVLTETYKNELCKGFDQRTV
HHHHHHCCCCCCCCCCCCCCCCHHHCCCCEEECCCCEEEEEEEEHHHHHHHHCCCHHHHH
TRVLLQAGWLKPASDGKASHKPRIKGVGTPRLYVFTGKIWGGE
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC
>Mature Secondary Structure 
SQNHVIELANTLKQRPIVCDYTGGRFRLTNEGLTYIGIDRDGTPLPPRWICAPLHIVAK
CCCHHHHHHHHHHHCCEEEEECCCEEEEECCCEEEEEECCCCCCCCCHHHHCCCEEEEE
TRDAQSGEWGRLLEWQDDDGITHQWAMPLALLQGDASDVRRELARLGLSISPHRTARDLL
CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHH
ASYLQVFPVDARARCVDKLGWHGDVFVTASQCIGQSTEKIVFQNTNAIEPAMSIKGSVDK
HHHHHHCCCCHHHHHHHHCCCCCCEEEEHHHHCCCCCCEEEEECCCCCCCHHHCCCCHHH
WRDSIGRLASGNSRLVFAISVALAPVLAKIVGEDSGGFHFRGASSSGKSTALSLAASVWG
HHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCC
NPQSYCRLWRSTTNGLEGLAALHNDGLLILDELSQMDPREAGEAAYLLANGQGKTRASRT
CHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEHHHCCCCCCCCCEEEEEECCCCCCCCCCC
GTVRQSSRWSLFFLSAGEESLTALMAKSGQRINAGQEIRLADIEADAGCQMGIFETIHDQ
CCCCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHH
LSPASMALSLKKYSSGYHGAIGRAWLNQVVANRQTISRFITDTIQSFVDIVIQPDATGQI
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHH
IRVARRFALVAAAGELASQFGLTGWKKGESFHAAKTCFIAWQDAFGVDGHREDRAIMAQV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEEEEEECCCCCCCCCCHHHHHHHH
RAFFESHGASRFDNVNSPNNDKILNRAGFYHTDGEGFRIYMVLTETYKNELCKGFDQRTV
HHHHHHCCCCCCCCCCCCCCCCHHHCCCCEEECCCCEEEEEEEEHHHHHHHHCCCHHHHH
TRVLLQAGWLKPASDGKASHKPRIKGVGTPRLYVFTGKIWGGE
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA