Click here to switch to the map view.

The map label for this gene is sodC

Identifier: 52842558

GI number: 52842558

Start: 2653744

End: 2654232

Strand: Direct

Name: sodC

Synonym: lpg2348

Alternate gene names: 52842558

Gene position: 2653744-2654232 (Clockwise)

Preceding gene: 52842554

Following gene: 52842561

Centisome position: 78.1

GC content: 41.72

Gene sequence:

>489_bases
ATGAATAAATCAGGAATAATATTAATTGGTACTATTTTATTCTCAAGCATGGCTATTGCCGATGATCTTACAGCACCAAT
TTACACAACTGGTCCCAAACCAGTTGCAATAGGCAAGGTAACCTTCACACAAACCCCTTATGGTGTTTTGATTACACCAG
ACTTAACTAACCTTCCTGAAGGTCCGCATGGTTTCCATTTACATAAAACTGCAGATTGTGGTAACCACGGAATGCATGCA
GAAGGACATTATGATCCTCAAAATACCAATAGCCACCAAGGCCCTTATGGTAACGGGCATTTGGGAGATTTACCTGTTTT
ATATGTCACAAGTAATGGGAAAGCAATGATACCTACTTTAGCCCCTCGTTTGAAATTAAGTGATATGCACAATTTAGCTG
TCATGATCCATGCCAATGGAGACACTTACAGTGACAATCCTCCACAAGGTGGCGGGGGGGACCGTATAGCGTGCGGCGTC
ATTAAATAG

Upstream 100 bases:

>100_bases
ACCCCAAAAAATCGATTTTTTTTTAAATCCTGTGGAATAAATGTTTTTCTTGGATAATACTAAAAATATTAACGGGCTTT
GAAAAATACCAGGAAATGAC

Downstream 100 bases:

>100_bases
TTTTTTGCATTTGAAGCAGATAATCTGCTTCAAATGCAATGATTTATTTGATTCGACCACTCACATGAACCGCATGAATC
ACAGCAGTAATACGTCCAAC

Product: superoxide dismutase (copper-zinc)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MNKSGIILIGTILFSSMAIADDLTAPIYTTGPKPVAIGKVTFTQTPYGVLITPDLTNLPEGPHGFHLHKTADCGNHGMHA
EGHYDPQNTNSHQGPYGNGHLGDLPVLYVTSNGKAMIPTLAPRLKLSDMHNLAVMIHANGDTYSDNPPQGGGGDRIACGV
IK

Sequences:

>Translated_162_residues
MNKSGIILIGTILFSSMAIADDLTAPIYTTGPKPVAIGKVTFTQTPYGVLITPDLTNLPEGPHGFHLHKTADCGNHGMHA
EGHYDPQNTNSHQGPYGNGHLGDLPVLYVTSNGKAMIPTLAPRLKLSDMHNLAVMIHANGDTYSDNPPQGGGGDRIACGV
IK
>Mature_162_residues
MNKSGIILIGTILFSSMAIADDLTAPIYTTGPKPVAIGKVTFTQTPYGVLITPDLTNLPEGPHGFHLHKTADCGNHGMHA
EGHYDPQNTNSHQGPYGNGHLGDLPVLYVTSNGKAMIPTLAPRLKLSDMHNLAVMIHANGDTYSDNPPQGGGGDRIACGV
IK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family

Homologues:

Organism=Escherichia coli, GI1787934, Length=166, Percent_Identity=43.9759036144578, Blast_Score=133, Evalue=7e-33,
Organism=Caenorhabditis elegans, GI17554806, Length=173, Percent_Identity=29.4797687861272, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SODC_LEGPH (Q5ZT17)

Other databases:

- EMBL:   D29953
- EMBL:   AE017354
- RefSeq:   YP_096357.1
- ProteinModelPortal:   Q5ZT17
- SMR:   Q5ZT17
- STRING:   Q5ZT17
- GeneID:   3080573
- GenomeReviews:   AE017354_GR
- KEGG:   lpn:lpg2348
- NMPDR:   fig|272624.3.peg.167
- eggNOG:   COG2032
- HOGENOM:   HBG609879
- OMA:   IHANGDT
- ProtClustDB:   CLSK833342
- BioCyc:   LPNE272624:LPG2348-MONOMER
- InterPro:   IPR018152
- InterPro:   IPR001424
- Gene3D:   G3DSA:2.60.40.200
- PANTHER:   PTHR10003

Pfam domain/function: PF00080 Sod_Cu; SSF49329 SOD_Cu_Zn

EC number: =1.15.1.1

Molecular weight: Translated: 17077; Mature: 17077

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS00087 SOD_CU_ZN_1; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSGIILIGTILFSSMAIADDLTAPIYTTGPKPVAIGKVTFTQTPYGVLITPDLTNLPE
CCCCCEEEEHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEEECCCCCEEEECCCCCCCCC
GPHGFHLHKTADCGNHGMHAEGHYDPQNTNSHQGPYGNGHLGDLPVLYVTSNGKAMIPTL
CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEECCCC
APRLKLSDMHNLAVMIHANGDTYSDNPPQGGGGDRIACGVIK
CCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MNKSGIILIGTILFSSMAIADDLTAPIYTTGPKPVAIGKVTFTQTPYGVLITPDLTNLPE
CCCCCEEEEHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEEECCCCCEEEECCCCCCCCC
GPHGFHLHKTADCGNHGMHAEGHYDPQNTNSHQGPYGNGHLGDLPVLYVTSNGKAMIPTL
CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEECCCC
APRLKLSDMHNLAVMIHANGDTYSDNPPQGGGGDRIACGVIK
CCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9086394