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The map label for this gene is ydaL [H]

Identifier: 52842511

GI number: 52842511

Start: 2602779

End: 2603561

Strand: Reverse

Name: ydaL [H]

Synonym: lpg2301

Alternate gene names: 52842511

Gene position: 2603561-2602779 (Counterclockwise)

Preceding gene: 52842512

Following gene: 52842510

Centisome position: 76.63

GC content: 40.87

Gene sequence:

>783_bases
TTGAAAAAGATGGCGAAAGAATATTATTTATCCGATGAGATCGAAGAAATAGTGCTCGCGAGTACTGTATTGTCTTACTC
TCGACCCAATTTATCATCAAAAAGCTTCAATGATTTAAAAAATGGAAAAACTCCCTGGGAAGCGGAACTGGATTTAAAAG
GTTTAAACGTTGAATCTGCTCGTAAGAGCTTATATCAATTTATCCAAACTCAAATAAAAAATAACAAACAATGCGTTCTA
ATTATTCATGGCGCGGATAATTCTCAGGACAAACCGCCTTTAATGAAAAATCTGGTGAATCGGTGGTTGCCTCAGATCAA
TGAGGTATTGGCATTTCATAGCGCCAAACCCAAGGATGGTGGTTCTGCAGCTGTTTATGTCTTGTTGGGCTCAGTGTTTC
ATGTTGAGTTACCCACACGATTGCCTTCCAATCGCAGTGAAAGTACTTTCCTGGTGGCTGAAACAAAAGCAATGGAAAGA
CGAAGACGTTTGGCTGAACAGCAGGGAGAGAGAAGGTTTGCTTCTGTTAAAGCGCGTGAACACCCTGAAGAAGAAATCAA
GGTTGCTCCCGAGGGGGAGTTACAAAACAATATATTGCAACACCCTGAATTGAATAGTCAGCGTTTTGATGGAATAGATC
CTAATTTAAACCCTGAACCGCCGCTTAATACAGAAGCAAGAAGGGAGTTTGATAATGAGAGAAGAGAACAGGATAAAGAA
AAACAATTACGCTTAGGCAATATGCCAAAATTTACTACAGCACCTACCCCCCGGGGGCCCTAA

Upstream 100 bases:

>100_bases
TAGAAAACCTGTATGCCCCCATAAGGTCATGCAGGTTATATTAGAAAAAATGCCATACTTTTTATATCCTAAGTTATACT
TCTATTATGACTGTTAAATT

Downstream 100 bases:

>100_bases
ATGAGTATTGCAAACGATATTATCAGTCATAGAATGCCTGATTTTGATGCTTATCTGCGTGCAGGGGAATCTTTGGATGA
TATCGATGAATATGGTTTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MKKMAKEYYLSDEIEEIVLASTVLSYSRPNLSSKSFNDLKNGKTPWEAELDLKGLNVESARKSLYQFIQTQIKNNKQCVL
IIHGADNSQDKPPLMKNLVNRWLPQINEVLAFHSAKPKDGGSAAVYVLLGSVFHVELPTRLPSNRSESTFLVAETKAMER
RRRLAEQQGERRFASVKAREHPEEEIKVAPEGELQNNILQHPELNSQRFDGIDPNLNPEPPLNTEARREFDNERREQDKE
KQLRLGNMPKFTTAPTPRGP

Sequences:

>Translated_260_residues
MKKMAKEYYLSDEIEEIVLASTVLSYSRPNLSSKSFNDLKNGKTPWEAELDLKGLNVESARKSLYQFIQTQIKNNKQCVL
IIHGADNSQDKPPLMKNLVNRWLPQINEVLAFHSAKPKDGGSAAVYVLLGSVFHVELPTRLPSNRSESTFLVAETKAMER
RRRLAEQQGERRFASVKAREHPEEEIKVAPEGELQNNILQHPELNSQRFDGIDPNLNPEPPLNTEARREFDNERREQDKE
KQLRLGNMPKFTTAPTPRGP
>Mature_260_residues
MKKMAKEYYLSDEIEEIVLASTVLSYSRPNLSSKSFNDLKNGKTPWEAELDLKGLNVESARKSLYQFIQTQIKNNKQCVL
IIHGADNSQDKPPLMKNLVNRWLPQINEVLAFHSAKPKDGGSAAVYVLLGSVFHVELPTRLPSNRSESTFLVAETKAMER
RRRLAEQQGERRFASVKAREHPEEEIKVAPEGELQNNILQHPELNSQRFDGIDPNLNPEPPLNTEARREFDNERREQDKE
KQLRLGNMPKFTTAPTPRGP

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=122, Percent_Identity=33.6065573770492, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 29713; Mature: 29713

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKMAKEYYLSDEIEEIVLASTVLSYSRPNLSSKSFNDLKNGKTPWEAELDLKGLNVESA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHH
RKSLYQFIQTQIKNNKQCVLIIHGADNSQDKPPLMKNLVNRWLPQINEVLAFHSAKPKDG
HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GSAAVYVLLGSVFHVELPTRLPSNRSESTFLVAETKAMERRRRLAEQQGERRFASVKARE
CCHHHHHHHHHHHEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHC
HPEEEIKVAPEGELQNNILQHPELNSQRFDGIDPNLNPEPPLNTEARREFDNERREQDKE
CCHHHEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
KQLRLGNMPKFTTAPTPRGP
HHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKMAKEYYLSDEIEEIVLASTVLSYSRPNLSSKSFNDLKNGKTPWEAELDLKGLNVESA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHH
RKSLYQFIQTQIKNNKQCVLIIHGADNSQDKPPLMKNLVNRWLPQINEVLAFHSAKPKDG
HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GSAAVYVLLGSVFHVELPTRLPSNRSESTFLVAETKAMERRRRLAEQQGERRFASVKARE
CCHHHHHHHHHHHEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHC
HPEEEIKVAPEGELQNNILQHPELNSQRFDGIDPNLNPEPPLNTEARREFDNERREQDKE
CCHHHEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
KQLRLGNMPKFTTAPTPRGP
HHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]