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The map label for this gene is dedA [H]

Identifier: 52842460

GI number: 52842460

Start: 2548037

End: 2548792

Strand: Direct

Name: dedA [H]

Synonym: lpg2247

Alternate gene names: 52842460

Gene position: 2548037-2548792 (Clockwise)

Preceding gene: 52842457

Following gene: 52842471

Centisome position: 74.99

GC content: 39.81

Gene sequence:

>756_bases
ATGCCCGAGTGGTTTGAGATAACAGCTGATTTTATCCATAACTCACGTCAGTATAGATACCCTGGAATTCACGTCATACA
TTTAATCCAAAGAGACACTATGCAAAACATACAGCACCTGATTGACTACATTCTTCATATCGATGTTTATTTAAATGCCT
TTGTATCAACATATGGGTTTTGGACTTATCTTGCGTTATTTGCTGTCATCTTTTGTGAGACAGGCCTTATCGTCACTCCT
TTCTTACCAGGAGACTCCCTGTTATTTGCTGCAGGAAGTATAGCAGCTCAACCAGGAAACCCTATGAATATCATGCTGTT
GTTTGTTTTGCTTTTCATGGCTTCGATATTAGGGAATCAAGTGAATTTCCTTGTAGGGCGTGCAATAGGCCCTCGTGTCT
TTAGCGCTAAACGCTCCTGGTTACTGAATCCCAAGCATCTGCATGATACCCATGCTTTTTATGAGAAGCATGGCGGCAAA
ACAATAATACTGGCGCGTTTTATTCCCATAATACGCACCTTTGCTCCATTTATTGCAGGTATTGGCAGGATGCGATCATT
GCATTTCACGCTTTTCAATCTGATCAGCGCCATACTTTGGATTGGAAGTCTTCTTAGCCTGGGATATTATTTAGGCTCAA
TCCCATTAATAAAAGAGAATTTCTCATTGGTTATCTATGGGGTCATAGCGATTTCAATTTTACCGCCCATCATCGCTTTA
ATTAGTAAAAAATCGACGTCCTCAATTAAAAAATAA

Upstream 100 bases:

>100_bases
TCAAAATGGGTATCCTTTTGTTTCTTTAGAGTAACGTGAGTGATGAATAAAGATTATATAAGAACCAGTCGATACCCAGG
GAGCCGTTCAGGCTGAGGAG

Downstream 100 bases:

>100_bases
TATACTTTAGGGACTTATGCGGGTGCAAAGGGCTCTAGGATGCCTTTTACACCACGCTCTTACTAAGGAAGTAACCTTTA
CACGGGGTATGCAAATTTTT

Product: DedA family protein

Products: NA

Alternate protein names: Protein DSG-1 [H]

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MPEWFEITADFIHNSRQYRYPGIHVIHLIQRDTMQNIQHLIDYILHIDVYLNAFVSTYGFWTYLALFAVIFCETGLIVTP
FLPGDSLLFAAGSIAAQPGNPMNIMLLFVLLFMASILGNQVNFLVGRAIGPRVFSAKRSWLLNPKHLHDTHAFYEKHGGK
TIILARFIPIIRTFAPFIAGIGRMRSLHFTLFNLISAILWIGSLLSLGYYLGSIPLIKENFSLVIYGVIAISILPPIIAL
ISKKSTSSIKK

Sequences:

>Translated_251_residues
MPEWFEITADFIHNSRQYRYPGIHVIHLIQRDTMQNIQHLIDYILHIDVYLNAFVSTYGFWTYLALFAVIFCETGLIVTP
FLPGDSLLFAAGSIAAQPGNPMNIMLLFVLLFMASILGNQVNFLVGRAIGPRVFSAKRSWLLNPKHLHDTHAFYEKHGGK
TIILARFIPIIRTFAPFIAGIGRMRSLHFTLFNLISAILWIGSLLSLGYYLGSIPLIKENFSLVIYGVIAISILPPIIAL
ISKKSTSSIKK
>Mature_250_residues
PEWFEITADFIHNSRQYRYPGIHVIHLIQRDTMQNIQHLIDYILHIDVYLNAFVSTYGFWTYLALFAVIFCETGLIVTPF
LPGDSLLFAAGSIAAQPGNPMNIMLLFVLLFMASILGNQVNFLVGRAIGPRVFSAKRSWLLNPKHLHDTHAFYEKHGGKT
IILARFIPIIRTFAPFIAGIGRMRSLHFTLFNLISAILWIGSLLSLGYYLGSIPLIKENFSLVIYGVIAISILPPIIALI
SKKSTSSIKK

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=208, Percent_Identity=51.9230769230769, Blast_Score=233, Evalue=1e-62,
Organism=Escherichia coli, GI1789481, Length=158, Percent_Identity=38.6075949367089, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789384, Length=160, Percent_Identity=33.75, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 28278; Mature: 28147

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEWFEITADFIHNSRQYRYPGIHVIHLIQRDTMQNIQHLIDYILHIDVYLNAFVSTYGF
CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WTYLALFAVIFCETGLIVTPFLPGDSLLFAAGSIAAQPGNPMNIMLLFVLLFMASILGNQ
HHHHHHHHHHHHCCCCEEEECCCCCCHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCH
VNFLVGRAIGPRVFSAKRSWLLNPKHLHDTHAFYEKHGGKTIILARFIPIIRTFAPFIAG
HHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHH
IGRMRSLHFTLFNLISAILWIGSLLSLGYYLGSIPLIKENFSLVIYGVIAISILPPIIAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHH
ISKKSTSSIKK
HCCCCHHCCCC
>Mature Secondary Structure 
PEWFEITADFIHNSRQYRYPGIHVIHLIQRDTMQNIQHLIDYILHIDVYLNAFVSTYGF
CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WTYLALFAVIFCETGLIVTPFLPGDSLLFAAGSIAAQPGNPMNIMLLFVLLFMASILGNQ
HHHHHHHHHHHHCCCCEEEECCCCCCHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCH
VNFLVGRAIGPRVFSAKRSWLLNPKHLHDTHAFYEKHGGKTIILARFIPIIRTFAPFIAG
HHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHH
IGRMRSLHFTLFNLISAILWIGSLLSLGYYLGSIPLIKENFSLVIYGVIAISILPPIIAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHH
ISKKSTSSIKK
HCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]