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The map label for this gene is ocd2 [H]

Identifier: 52842409

GI number: 52842409

Start: 2478431

End: 2479402

Strand: Reverse

Name: ocd2 [H]

Synonym: lpg2196

Alternate gene names: 52842409

Gene position: 2479402-2478431 (Counterclockwise)

Preceding gene: 52842410

Following gene: 52842408

Centisome position: 72.97

GC content: 39.3

Gene sequence:

>972_bases
ATGAGTCTCAGGATATTGTCTTTAAGCGATGTAAAGCAGAGCATCACCATGCATCAGGCAATCAGTGCTTTGGAAAGCGC
ATTTATTCAATTGGCAAATAACACGGTGAAGTTGCCCTTGAGAACGGGTGTTACCATTGAGGAAGAAAACGGATTAATGT
TGACTATGCCGGGTTATCTTGCCCAAGAAAAAAGCTTAGGCTTAAAAGTAGTATCCATTTTTCCTGAAAATTTGACTAAA
AATAAACCTACTATCACTGGTTTTATTATGTTGCTTGACGCAACAACAGGTGAAGCTAAAGTATTAATGGATGCTGCTTA
CCTCACCTCCTTAAGAACGGGCGCTGTTTCAGGACTGGCGACAAAATATTTTGCACGCGATAATGCGACTCAGGTCGCGA
TCATTGGGTCAGGTGCTCAAGCGAAAACACAACTTGAGGCAGTTGCTTCTGTGCGAGATATACAACAGGTTTTTGTTTGG
TCGCGCAATATTAAAAATGCCGAAAAATTTGCTAACGAATTCGAAGATCAATTTGATATGACAATTTGTCCTTCTGTCGC
CATGGCAGTGAAAGATGCCGATATTATTTGTACAGCAACCAATAGCACAGAACCACTGATTCATTTTGGAGACATTTCGC
CACATGCCCATATTAATGCCATAGGCTCGCATCACCCTTCAATGAAAGAAATTAGCCATGATGTGTTAAGCCGAGCAGTG
GTGATTGCTGATCAGTTAGACGCTGTTTTAGCTGAATCAGGGGAAATCATTAGTGCAGTAGAGCACAATCATTTAAAAAA
GGAATTGATTATTGAAATCGGTCACTGGCTATTACAAAAAAATACTGACTATAAAGATAAGCTTACAGTGTTTAAATCCG
TTGGTTTGGCAATACAGGATTTAAGTGTTGCTGAAGCAGTTTATCAAAATGCATTGAAAAATAATCTTGGTGAGATCTTT
TCTATTAGTTAG

Upstream 100 bases:

>100_bases
CTTTGATATGAAAACAGGAAATACTTTATTTGATTTAAAACCATAAGATGTGATTCTATTCAGTCACTACGTAGTTAACT
AAAGTATAGGGTTTATTGAT

Downstream 100 bases:

>100_bases
TCAGGGCAACATTTATGAGAGTGAGTATAAATGAGTCATCCTGGGAAAAAGAAAATACTTTTTTCAATTTTATATTCCTT
ACGTCATCTGATTGCTCTAC

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MSLRILSLSDVKQSITMHQAISALESAFIQLANNTVKLPLRTGVTIEEENGLMLTMPGYLAQEKSLGLKVVSIFPENLTK
NKPTITGFIMLLDATTGEAKVLMDAAYLTSLRTGAVSGLATKYFARDNATQVAIIGSGAQAKTQLEAVASVRDIQQVFVW
SRNIKNAEKFANEFEDQFDMTICPSVAMAVKDADIICTATNSTEPLIHFGDISPHAHINAIGSHHPSMKEISHDVLSRAV
VIADQLDAVLAESGEIISAVEHNHLKKELIIEIGHWLLQKNTDYKDKLTVFKSVGLAIQDLSVAEAVYQNALKNNLGEIF
SIS

Sequences:

>Translated_323_residues
MSLRILSLSDVKQSITMHQAISALESAFIQLANNTVKLPLRTGVTIEEENGLMLTMPGYLAQEKSLGLKVVSIFPENLTK
NKPTITGFIMLLDATTGEAKVLMDAAYLTSLRTGAVSGLATKYFARDNATQVAIIGSGAQAKTQLEAVASVRDIQQVFVW
SRNIKNAEKFANEFEDQFDMTICPSVAMAVKDADIICTATNSTEPLIHFGDISPHAHINAIGSHHPSMKEISHDVLSRAV
VIADQLDAVLAESGEIISAVEHNHLKKELIIEIGHWLLQKNTDYKDKLTVFKSVGLAIQDLSVAEAVYQNALKNNLGEIF
SIS
>Mature_322_residues
SLRILSLSDVKQSITMHQAISALESAFIQLANNTVKLPLRTGVTIEEENGLMLTMPGYLAQEKSLGLKVVSIFPENLTKN
KPTITGFIMLLDATTGEAKVLMDAAYLTSLRTGAVSGLATKYFARDNATQVAIIGSGAQAKTQLEAVASVRDIQQVFVWS
RNIKNAEKFANEFEDQFDMTICPSVAMAVKDADIICTATNSTEPLIHFGDISPHAHINAIGSHHPSMKEISHDVLSRAVV
IADQLDAVLAESGEIISAVEHNHLKKELIIEIGHWLLQKNTDYKDKLTVFKSVGLAIQDLSVAEAVYQNALKNNLGEIFS
IS

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=295, Percent_Identity=32.2033898305085, Blast_Score=159, Evalue=3e-39,
Organism=Homo sapiens, GI62241008, Length=274, Percent_Identity=32.8467153284672, Blast_Score=157, Evalue=9e-39,
Organism=Drosophila melanogaster, GI24642678, Length=340, Percent_Identity=27.9411764705882, Blast_Score=122, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 35145; Mature: 35014

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLRILSLSDVKQSITMHQAISALESAFIQLANNTVKLPLRTGVTIEEENGLMLTMPGYL
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEECCCCEEEEECCHH
AQEKSLGLKVVSIFPENLTKNKPTITGFIMLLDATTGEAKVLMDAAYLTSLRTGAVSGLA
HHHHCCCEEEEEECCHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
TKYFARDNATQVAIIGSGAQAKTQLEAVASVRDIQQVFVWSRNIKNAEKFANEFEDQFDM
HHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
TICPSVAMAVKDADIICTATNSTEPLIHFGDISPHAHINAIGSHHPSMKEISHDVLSRAV
EECCHHHHHCCCCCEEEEECCCCCCEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHHH
VIADQLDAVLAESGEIISAVEHNHLKKELIIEIGHWLLQKNTDYKDKLTVFKSVGLAIQD
HHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHH
LSVAEAVYQNALKNNLGEIFSIS
HHHHHHHHHHHHHCCCCHHEECC
>Mature Secondary Structure 
SLRILSLSDVKQSITMHQAISALESAFIQLANNTVKLPLRTGVTIEEENGLMLTMPGYL
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEECCCCEEEEECCHH
AQEKSLGLKVVSIFPENLTKNKPTITGFIMLLDATTGEAKVLMDAAYLTSLRTGAVSGLA
HHHHCCCEEEEEECCHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
TKYFARDNATQVAIIGSGAQAKTQLEAVASVRDIQQVFVWSRNIKNAEKFANEFEDQFDM
HHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
TICPSVAMAVKDADIICTATNSTEPLIHFGDISPHAHINAIGSHHPSMKEISHDVLSRAV
EECCHHHHHCCCCCEEEEECCCCCCEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHHH
VIADQLDAVLAESGEIISAVEHNHLKKELIIEIGHWLLQKNTDYKDKLTVFKSVGLAIQD
HHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHH
LSVAEAVYQNALKNNLGEIFSIS
HHHHHHHHHHHHHCCCCHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]