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The map label for this gene is yagA [H]

Identifier: 52842333

GI number: 52842333

Start: 2363881

End: 2364906

Strand: Reverse

Name: yagA [H]

Synonym: lpg2119

Alternate gene names: 52842333

Gene position: 2364906-2363881 (Counterclockwise)

Preceding gene: 52842339

Following gene: 52842331

Centisome position: 69.6

GC content: 38.11

Gene sequence:

>1026_bases
ATGCCATGGCAGGAGTGTACTAAAGTGGATGAAAAGATAAAATTTGTAGCAAGATTGTTAGATGGCGAACAAATGTCATC
TTTATGCCAAGAATTCGGTATTTCTCGAAAGACGGGGCATAAGATATACAATCGTTATAAAGAAAGTGGATTGGAAGGAT
TAAATGATCGAAGCAGGAAGCCTCATCGTTATGCGAACCAATTACCTTTTCAATTAGAAAAAGAGATATTAAAGGTAAAG
AAAGAGAAACCTACTTGGGGAGCTCCCAAGATACGAGAAAAGATATTGAGACAATATCCAGATGTAAAATCACCTGCAAT
AAGCACCATTCATACTATTCTTGATAAATATGGCTTGGTCACAAAACGTAAGAGAAGGCGTTACAAAGCAGAAGGTACTA
AGTTAACTAATGGAAAGACTCCCAACGAATTATGGTGTGCAGATTATAAAGGTGAATTTCAATTAGGGAGTAAAGAGTAT
TGCTACCCATTAACACTCACTGATTTTAACAGTCGCTACTTACTTGCATGCGAAGGGTTATCAACGACAAAAGAGCAATA
TGCTATCACTGTATTTGAACGTGTTTTTAAAGAATATGGGCTACCTAACGCCATCCGTACCGATAATGGTGTTCCTTTCT
CTTCAGTACAAGCATTATTTGGACTAAGTAAACTTTCCGTATGGTGGCTGCGATTAGGTATCAGCATTGAGCGCATAAGA
CCAGGCAATCCGCAAGAAAATGGTCGTCATGAGCGTATGCATTTAACTTTAAAGAAAGAAACAACAAAACCCTCAGGAGA
AAACTTCTTACAGCAGCAAGAGAAGTTTGACCGATTTATTGATGAGTACAATAATGAACGTCCTCATCAAGCTTTAGATA
TGCGTTATCCAGGTGAAGTATATATCCCATCAAACAAGGAGTACAAAGGACTGCCTGAGGTTGATTATCCATTTCATGAT
AAAATGATAACAGTAACTCATTGTGGTAGGTTATGTGGCTCTACCCCAACAAAGGGGGCACTTTAA

Upstream 100 bases:

>100_bases
GAAGATTCAGGTATTTGGGAAAGATGTCCTTATTGAGACATAGGTAACAAAATATTCTGGAGACATAGGTTACACTCAAA
GGCATTTCTGGAGAAGAGAA

Downstream 100 bases:

>100_bases
TCAAGTTAGTATAAACTAACCTCTTGATTTCGCGATCAAAAAGGAGATTAAAGTGCCGAGACATGATGTTATCCTAAATT
TGCCTGGTTTTACTATAAAA

Product: transposase (ISmav2)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MPWQECTKVDEKIKFVARLLDGEQMSSLCQEFGISRKTGHKIYNRYKESGLEGLNDRSRKPHRYANQLPFQLEKEILKVK
KEKPTWGAPKIREKILRQYPDVKSPAISTIHTILDKYGLVTKRKRRRYKAEGTKLTNGKTPNELWCADYKGEFQLGSKEY
CYPLTLTDFNSRYLLACEGLSTTKEQYAITVFERVFKEYGLPNAIRTDNGVPFSSVQALFGLSKLSVWWLRLGISIERIR
PGNPQENGRHERMHLTLKKETTKPSGENFLQQQEKFDRFIDEYNNERPHQALDMRYPGEVYIPSNKEYKGLPEVDYPFHD
KMITVTHCGRLCGSTPTKGAL

Sequences:

>Translated_341_residues
MPWQECTKVDEKIKFVARLLDGEQMSSLCQEFGISRKTGHKIYNRYKESGLEGLNDRSRKPHRYANQLPFQLEKEILKVK
KEKPTWGAPKIREKILRQYPDVKSPAISTIHTILDKYGLVTKRKRRRYKAEGTKLTNGKTPNELWCADYKGEFQLGSKEY
CYPLTLTDFNSRYLLACEGLSTTKEQYAITVFERVFKEYGLPNAIRTDNGVPFSSVQALFGLSKLSVWWLRLGISIERIR
PGNPQENGRHERMHLTLKKETTKPSGENFLQQQEKFDRFIDEYNNERPHQALDMRYPGEVYIPSNKEYKGLPEVDYPFHD
KMITVTHCGRLCGSTPTKGAL
>Mature_340_residues
PWQECTKVDEKIKFVARLLDGEQMSSLCQEFGISRKTGHKIYNRYKESGLEGLNDRSRKPHRYANQLPFQLEKEILKVKK
EKPTWGAPKIREKILRQYPDVKSPAISTIHTILDKYGLVTKRKRRRYKAEGTKLTNGKTPNELWCADYKGEFQLGSKEYC
YPLTLTDFNSRYLLACEGLSTTKEQYAITVFERVFKEYGLPNAIRTDNGVPFSSVQALFGLSKLSVWWLRLGISIERIRP
GNPQENGRHERMHLTLKKETTKPSGENFLQQQEKFDRFIDEYNNERPHQALDMRYPGEVYIPSNKEYKGLPEVDYPFHDK
MITVTHCGRLCGSTPTKGAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=314, Percent_Identity=34.3949044585987, Blast_Score=177, Evalue=1e-45,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 39640; Mature: 39509

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPWQECTKVDEKIKFVARLLDGEQMSSLCQEFGISRKTGHKIYNRYKESGLEGLNDRSRK
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC
PHRYANQLPFQLEKEILKVKKEKPTWGAPKIREKILRQYPDVKSPAISTIHTILDKYGLV
CHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHH
TKRKRRRYKAEGTKLTNGKTPNELWCADYKGEFQLGSKEYCYPLTLTDFNSRYLLACEGL
HHHHHHHHHHCCCEECCCCCCCCEEECCCCCCEEECCCCCEEEEEEECCCCEEEEEECCC
STTKEQYAITVFERVFKEYGLPNAIRTDNGVPFSSVQALFGLSKLSVWWLRLGISIERIR
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECC
PGNPQENGRHERMHLTLKKETTKPSGENFLQQQEKFDRFIDEYNNERPHQALDMRYPGEV
CCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCE
YIPSNKEYKGLPEVDYPFHDKMITVTHCGRLCGSTPTKGAL
EECCCCCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PWQECTKVDEKIKFVARLLDGEQMSSLCQEFGISRKTGHKIYNRYKESGLEGLNDRSRK
CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC
PHRYANQLPFQLEKEILKVKKEKPTWGAPKIREKILRQYPDVKSPAISTIHTILDKYGLV
CHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHH
TKRKRRRYKAEGTKLTNGKTPNELWCADYKGEFQLGSKEYCYPLTLTDFNSRYLLACEGL
HHHHHHHHHHCCCEECCCCCCCCEEECCCCCCEEECCCCCEEEEEEECCCCEEEEEECCC
STTKEQYAITVFERVFKEYGLPNAIRTDNGVPFSSVQALFGLSKLSVWWLRLGISIERIR
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECC
PGNPQENGRHERMHLTLKKETTKPSGENFLQQQEKFDRFIDEYNNERPHQALDMRYPGEV
CCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCE
YIPSNKEYKGLPEVDYPFHDKMITVTHCGRLCGSTPTKGAL
EECCCCCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 8113168 [H]