Click here to switch to the map view.

The map label for this gene is csrA

Identifier: 52842308

GI number: 52842308

Start: 2343425

End: 2343661

Strand: Reverse

Name: csrA

Synonym: lpg2094

Alternate gene names: 52842308

Gene position: 2343661-2343425 (Counterclockwise)

Preceding gene: 52842309

Following gene: 52842307

Centisome position: 68.98

GC content: 36.29

Gene sequence:

>237_bases
ATGTTGAGTTTAACTAGAAGAGTCGGTGAAAGCATTGTTATTGGAGAAGATATATTTATCACAGTTCTATGTTGTAAAGG
GAATCAGGTACGCATTGGGTTTAATGCACCCAATTCAGTAGCCATCCACCGTTATGAAATTTATCAAAAAATTCAATCTG
AAAAGCACGATGGTTTGGCTGATCCAACAAAGAAATTTTGCCCATCAATGCAGCAATCAATCCTCAATCACCATTAA

Upstream 100 bases:

>100_bases
GATGCAGCTCCCAAAAACAATAACCCTGAAGTGGCTAAAACCCAATTACTGAAAATGAAACACATTTTAAATATGAAAGT
TAACTAAAAAGGAGAAGAAG

Downstream 100 bases:

>100_bases
AAAGGAGGGATAACATGTCTTTATTAAATCAGTTCAGAAGTAACGTGTTAAGCAGTATTAATGCTCACATTGGAAAGATT
TTCATACTTATTTGCTTGCT

Product: carbon storage regulator RsmA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 78; Mature: 78

Protein sequence:

>78_residues
MLSLTRRVGESIVIGEDIFITVLCCKGNQVRIGFNAPNSVAIHRYEIYQKIQSEKHDGLADPTKKFCPSMQQSILNHH

Sequences:

>Translated_78_residues
MLSLTRRVGESIVIGEDIFITVLCCKGNQVRIGFNAPNSVAIHRYEIYQKIQSEKHDGLADPTKKFCPSMQQSILNHH
>Mature_78_residues
MLSLTRRVGESIVIGEDIFITVLCCKGNQVRIGFNAPNSVAIHRYEIYQKIQSEKHDGLADPTKKFCPSMQQSILNHH

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding [H]

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family [H]

Homologues:

Organism=Escherichia coli, GI1789047, Length=55, Percent_Identity=65.4545454545455, Blast_Score=82, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003751
- ProDom:   PD009007 [H]

Pfam domain/function: PF02599 CsrA [H]

EC number: NA

Molecular weight: Translated: 8826; Mature: 8826

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLTRRVGESIVIGEDIFITVLCCKGNQVRIGFNAPNSVAIHRYEIYQKIQSEKHDGLA
CCCCHHHCCCEEEECCCEEEEEEECCCCEEEEEECCCCCEEHHHHHHHHHHHHCCCCCCC
DPTKKFCPSMQQSILNHH
CCHHHHCHHHHHHHHCCC
>Mature Secondary Structure
MLSLTRRVGESIVIGEDIFITVLCCKGNQVRIGFNAPNSVAIHRYEIYQKIQSEKHDGLA
CCCCHHHCCCEEEECCCEEEEEEECCCCEEEEEECCCCCEEHHHHHHHHHHHHCCCCCCC
DPTKKFCPSMQQSILNHH
CCHHHHCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA