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The map label for this gene is ykfC [H]

Identifier: 52842284

GI number: 52842284

Start: 2311404

End: 2312924

Strand: Reverse

Name: ykfC [H]

Synonym: lpg2070

Alternate gene names: 52842284

Gene position: 2312924-2311404 (Counterclockwise)

Preceding gene: 52842287

Following gene: 52842276

Centisome position: 68.07

GC content: 41.16

Gene sequence:

>1521_bases
ATGACGGATAATTTATTATCTGGTGCGCCTGACGCATTCATCTTAAATACAAAGTGGGATCAGCTCGACTGGCCTAGTAT
TGAGAAAAATGTATACAGACTTCAAGTGCGTATCGCAAAGGCAGTGAGTAATAAACAGCACGGAAAAGTGAAGTCATTGC
AATGGCTGCTGGTTAATTCCATCAGCGCAAAACTTCTTGCAGTGAGACGAGTAACGACAGCAAAAGGAAGCAAGACGCCT
GGTATTGATGGTGTTGTTTGGACAACATCAGAAGAAAAATGCGAGGCGGTGCGCAACCTAAAAGCAAGAGGGTATAAGGC
AACTCCGCTTCGAAGGATTTACATCCCGAAGAAGAATGGAAAAGAGCGTCCACTAAGCATACCCACTTTGAAAGATCGGG
CAATGCAAGCACTCTATTTGTTAGCATTAGAACCCGTTGGAGAGACTACAGCTGATCTAAATTCCTATGGATTTAGACCA
AAGCGAAGTACTCATGACGCGATATACCAGTGCTATGCAACCTTGGCACGGAAAAATTGCGCTCAATGGATTTTAGAAGG
CGACATTAAGGCCTGTTTTGATGAAATTGATCATGGATGGCTCAAAAGTAATATCATAATAGATCAACGAGTGCTAACAC
AGTGGTTGCAGGCAGGCTACATGGAAAAGAATCAATTATTTGAAACAGCACGAGGTACTCCGCAAGGTGGTCCAGCCTCA
CCACTGCTCGCAAATATGGTTCTAGACGGACTTGAGAGGGAAATTCACTCCGGCTGTGGGCAAGGCAATAAAATAAATTA
TATTCGTTTTGCCGATGATTTCATCGTAACTGCAAACAGTCCTGATATCCTCAAAGAAAAAGTGATGCCGATAATTTCAA
ACTTTCTTGCACAACGAGGTCTTTCATTGTCACAGGAAAAAACCAAAATTGTGCATATCGAGGAAGGCTTTGATTTTCTC
GGATTTAATGTCAGGAAATATAAGGGTAAGTTCTTAACTACGCCCTCAAAAGACAGCATTAAATCCGTACAAATGAAAAT
CAAAGAGACCGTCAAGAAAGGATATGGTTGGAAAGGCTCGGAGCTTATCTCAGCGCTGAATCCTATCATAAAAGGATGGG
CTAACTATCATCGAAAAGTCGTCTCAAAAGCAACATTTTCCGAACTGGATAATTACATATATCAAGAAACATTCCGTTGG
ACGATGAGGAAGTTTAGTGGTCATAATCGCTATAAAGCAATGGATCGTTATTTTCGAAATCGTAGCCTTACAAGGCGCTG
GATTTTTAGTGACGTGGTTAAGGCCAAGGACGGTACGAAGAAGTATGTTTGTATTAACAAAATGATGGATATAAAAATAC
AACGACACGTCAAAATTAGGTCGAGCGCCAACCCCTATCTACCCGAGTATGTTAAATACTTTGAAGATAGAAAAAAATGG
GCTAAAGACTGCTCCTTTGTTCAACGAATAAAGGACAAACAATTGAATGTTATTGGTAGCGAATACCTGCTGGGTGAATA
G

Upstream 100 bases:

>100_bases
GATACGGGTTTCAATGTCACCCGGTCTGAAAAGAAGCCCACGTCCGATTGGTCTTTCATTGCGAAAGAATTTGCAGAATT
TGTAGAAGTGAGGAAAGCAA

Downstream 100 bases:

>100_bases
CTTCAGAAAGGCTTGAGCGTAGTGCGGTGAAAGTCGCATGCTGCGTTCTTAGGCTTACTATTACCCATAACTAAGAAAGA
GCAAGATTCCAACCTTCCGC

Product: reverse transcriptase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 506; Mature: 505

Protein sequence:

>506_residues
MTDNLLSGAPDAFILNTKWDQLDWPSIEKNVYRLQVRIAKAVSNKQHGKVKSLQWLLVNSISAKLLAVRRVTTAKGSKTP
GIDGVVWTTSEEKCEAVRNLKARGYKATPLRRIYIPKKNGKERPLSIPTLKDRAMQALYLLALEPVGETTADLNSYGFRP
KRSTHDAIYQCYATLARKNCAQWILEGDIKACFDEIDHGWLKSNIIIDQRVLTQWLQAGYMEKNQLFETARGTPQGGPAS
PLLANMVLDGLEREIHSGCGQGNKINYIRFADDFIVTANSPDILKEKVMPIISNFLAQRGLSLSQEKTKIVHIEEGFDFL
GFNVRKYKGKFLTTPSKDSIKSVQMKIKETVKKGYGWKGSELISALNPIIKGWANYHRKVVSKATFSELDNYIYQETFRW
TMRKFSGHNRYKAMDRYFRNRSLTRRWIFSDVVKAKDGTKKYVCINKMMDIKIQRHVKIRSSANPYLPEYVKYFEDRKKW
AKDCSFVQRIKDKQLNVIGSEYLLGE

Sequences:

>Translated_506_residues
MTDNLLSGAPDAFILNTKWDQLDWPSIEKNVYRLQVRIAKAVSNKQHGKVKSLQWLLVNSISAKLLAVRRVTTAKGSKTP
GIDGVVWTTSEEKCEAVRNLKARGYKATPLRRIYIPKKNGKERPLSIPTLKDRAMQALYLLALEPVGETTADLNSYGFRP
KRSTHDAIYQCYATLARKNCAQWILEGDIKACFDEIDHGWLKSNIIIDQRVLTQWLQAGYMEKNQLFETARGTPQGGPAS
PLLANMVLDGLEREIHSGCGQGNKINYIRFADDFIVTANSPDILKEKVMPIISNFLAQRGLSLSQEKTKIVHIEEGFDFL
GFNVRKYKGKFLTTPSKDSIKSVQMKIKETVKKGYGWKGSELISALNPIIKGWANYHRKVVSKATFSELDNYIYQETFRW
TMRKFSGHNRYKAMDRYFRNRSLTRRWIFSDVVKAKDGTKKYVCINKMMDIKIQRHVKIRSSANPYLPEYVKYFEDRKKW
AKDCSFVQRIKDKQLNVIGSEYLLGE
>Mature_505_residues
TDNLLSGAPDAFILNTKWDQLDWPSIEKNVYRLQVRIAKAVSNKQHGKVKSLQWLLVNSISAKLLAVRRVTTAKGSKTPG
IDGVVWTTSEEKCEAVRNLKARGYKATPLRRIYIPKKNGKERPLSIPTLKDRAMQALYLLALEPVGETTADLNSYGFRPK
RSTHDAIYQCYATLARKNCAQWILEGDIKACFDEIDHGWLKSNIIIDQRVLTQWLQAGYMEKNQLFETARGTPQGGPASP
LLANMVLDGLEREIHSGCGQGNKINYIRFADDFIVTANSPDILKEKVMPIISNFLAQRGLSLSQEKTKIVHIEEGFDFLG
FNVRKYKGKFLTTPSKDSIKSVQMKIKETVKKGYGWKGSELISALNPIIKGWANYHRKVVSKATFSELDNYIYQETFRWT
MRKFSGHNRYKAMDRYFRNRSLTRRWIFSDVVKAKDGTKKYVCINKMMDIKIQRHVKIRSSANPYLPEYVKYFEDRKKWA
KDCSFVQRIKDKQLNVIGSEYLLGE

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=335, Percent_Identity=25.9701492537313, Blast_Score=115, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6226520, Length=333, Percent_Identity=24.3243243243243, Blast_Score=95, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 58121; Mature: 57990

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDNLLSGAPDAFILNTKWDQLDWPSIEKNVYRLQVRIAKAVSNKQHGKVKSLQWLLVNS
CCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ISAKLLAVRRVTTAKGSKTPGIDGVVWTTSEEKCEAVRNLKARGYKATPLRRIYIPKKNG
HHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCC
KERPLSIPTLKDRAMQALYLLALEPVGETTADLNSYGFRPKRSTHDAIYQCYATLARKNC
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
AQWILEGDIKACFDEIDHGWLKSNIIIDQRVLTQWLQAGYMEKNQLFETARGTPQGGPAS
HHHHHHCHHHHHHHHHCCCHHHCCEEEHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCC
PLLANMVLDGLEREIHSGCGQGNKINYIRFADDFIVTANSPDILKEKVMPIISNFLAQRG
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHCC
LSLSQEKTKIVHIEEGFDFLGFNVRKYKGKFLTTPSKDSIKSVQMKIKETVKKGYGWKGS
CCCCCCCCEEEEEECCCCCCCCCCEEECCCEECCCCHHHHHHHHHHHHHHHHHCCCCCHH
ELISALNPIIKGWANYHRKVVSKATFSELDNYIYQETFRWTMRKFSGHNRYKAMDRYFRN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
RSLTRRWIFSDVVKAKDGTKKYVCINKMMDIKIQRHVKIRSSANPYLPEYVKYFEDRKKW
CCHHHHHHHHHHHHCCCCCCEEEEEHHHHHHEEEEEEEEECCCCCCCHHHHHHHHHHHHH
AKDCSFVQRIKDKQLNVIGSEYLLGE
HHHHHHHHHHHHHHHHHCCCHHHCCC
>Mature Secondary Structure 
TDNLLSGAPDAFILNTKWDQLDWPSIEKNVYRLQVRIAKAVSNKQHGKVKSLQWLLVNS
CCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ISAKLLAVRRVTTAKGSKTPGIDGVVWTTSEEKCEAVRNLKARGYKATPLRRIYIPKKNG
HHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCC
KERPLSIPTLKDRAMQALYLLALEPVGETTADLNSYGFRPKRSTHDAIYQCYATLARKNC
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
AQWILEGDIKACFDEIDHGWLKSNIIIDQRVLTQWLQAGYMEKNQLFETARGTPQGGPAS
HHHHHHCHHHHHHHHHCCCHHHCCEEEHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCC
PLLANMVLDGLEREIHSGCGQGNKINYIRFADDFIVTANSPDILKEKVMPIISNFLAQRG
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHCC
LSLSQEKTKIVHIEEGFDFLGFNVRKYKGKFLTTPSKDSIKSVQMKIKETVKKGYGWKGS
CCCCCCCCEEEEEECCCCCCCCCCEEECCCEECCCCHHHHHHHHHHHHHHHHHCCCCCHH
ELISALNPIIKGWANYHRKVVSKATFSELDNYIYQETFRWTMRKFSGHNRYKAMDRYFRN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
RSLTRRWIFSDVVKAKDGTKKYVCINKMMDIKIQRHVKIRSSANPYLPEYVKYFEDRKKW
CCHHHHHHHHHHHHCCCCCCEEEEEHHHHHHEEEEEEEEECCCCCCCHHHHHHHHHHHHH
AKDCSFVQRIKDKQLNVIGSEYLLGE
HHHHHHHHHHHHHHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]