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The map label for this gene is secD

Identifier: 52842218

GI number: 52842218

Start: 2240180

End: 2242036

Strand: Reverse

Name: secD

Synonym: lpg2001

Alternate gene names: 52842218

Gene position: 2242036-2240180 (Counterclockwise)

Preceding gene: 52842219

Following gene: 52842217

Centisome position: 65.99

GC content: 39.9

Gene sequence:

>1857_bases
ATGCAAAATAAATATCCTCTATGGAAAAATCTAATGCTGATAGTGATTGCAGTCATTGGATTTGTTTACGCTATACCGAA
TTTGTATACGGAAAATCCCGTTGTTCAAATTTCTGCGGGTACAGATGAAGATACAGAGACAATAAAAAATCAGGTAGAGT
CCATATTAAAAAATGCCAATATGGATTATAAATCTCTGGTTGTGGAGAGGGATGGGGTAGAGGTAGTATTTTCTTCTACT
GATTCTCAATTATTAGCTCGTGATGTTATCAAGAATAGCCTGGGATCTGATTACACAGTGGCTTTGAATTTAGCGCCTTC
CACACCAGCTTGGCTTGAAGCAATTCATGCTGATCCTATGAAACAAGGATTGGACTTAAGAGGCGGTGTTCATTTTCTTC
TTGAAGTGGATGTCGAGAGTGTTATAAGTCGGCGTTATGAAGGAATAATGAAAAATATTGGCCAAGAATTACGTGAAGCA
GGTATTCGTTATTCAGGCATACGTTATTTATCAGATAAAGGGATTGAATTGCGTTTCAGAGATTCTGACTCAATGGAAAA
TGCTTTAGTTGAGTTAAGACAAAAAATATCTGATGTGGTTTTTGTTAAAACTAAAACACAAAATTCAATTTTAGGCGCCA
TTTCTCCAGCAGAATTAAATTCCATAAGACAAAATACTATTGAGCAGACAATGAGTATCTTGAGAAATCGTGTCAACGAG
CTCGGAGTTGGTGAAGCTGTCGTACAACAACAAGGGGCGACTCGAGTCGCCGTTGATTTGCCAGGCATTCAAGACGCGGC
CAGAGCAAAACAAATACTTGGTGGTACTGCTACTTTGGAATTTCATTTGGTTGATCAGGAAAATGACCCTTTCATTGCAA
AGCAAACTGGCGTAGTTCCTGTCAATGATAAGCTGTATATGATGGATGGTCATCCTATCTTATTAAAGAGACAGGTTGTT
TTAAGTGGTGACTCTATTACGTCAGCAGTGTCCAGTTTTGATCAACAAACGGCTTCTCCATCTGTTCAAATTCAGTTGGG
TGGTGGGGGCGAGAGCTTGTTTACTAAAGTTACGCGTGAAAATATCGGTAAGCGCATGGCGATCGTTTTTGTGGAAACCA
AAACGACTACACAAACAATTAATGGCGAGGAAAAACGAGTAACAAAGAAAGAAGAGCGAGTTATTAGTGCGCCAGTGATT
CAAAATGCTTTAGGTAGCAATTTCCAGATTACCGGACTGACCGATAGTAAAGAAGCAAGTAATCTGGCTTTATTATTAAG
AGCTGGCGCTTTACCCGCTGCAATCTATCCTGTTGAAGAGCGTACCGTTGGCCCAACTCTTGGAAAGGAAAATATTCGCC
GAGGACTTATTTCCCTGGAAGTTGGTATGGGTTTAATTTTGGTACTAATGCTCGTGTATTATCATTTTTTTGGTTTAATT
GCTGATATTGCATTGATGCTGAATTTAGTTTTTCTTTGCGCATTGTTATCCATAATTGATGCGACTCTGACTTTACCGGG
AATTGCGGGGATTGTTTTGACCGTGGGCATGGCTGTTGATGCCAATGTCCTGATTTATGAGCGGATTAGAGAGGAGTTGC
GTAATGGATTGTCTCCTCAAGCTGCTATTCATGCAGGATATGAGCGAGCATTTTCAACTATATTGGATGCCAACGTGACT
ACTTTAATTGTAGCTATCATTCTATTCGCGGTGGGCACAGGACCGGTGCGCGGGTTTGCGGTTGTCCTTTCTCTAGGTTT
GTTAACTTCTATGTTAACTGGTATTACTTACACTAGGGCTATTGTGAATTGGTATTATGGTGGGCGTAATGTCAAAAAAT
TATCTATAGGCATATAA

Upstream 100 bases:

>100_bases
AGCAGAAGGTATAGAAATTAATTTGCAAAAAGGCGCAGTTACTGCAGTATTACCAAAAGGCACAATCAAATCACTTTAAG
TTAGGCATAGGGAATCAGAA

Downstream 100 bases:

>100_bases
GGCGATACTCAGATGGAATTTTTTAATCCAAATTCAAAAATAGATTTTATGGGCGCGCGCCGTTGGACTGCATTGTTTTC
TATATTGATTTTTGTAGTGT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 618; Mature: 618

Protein sequence:

>618_residues
MQNKYPLWKNLMLIVIAVIGFVYAIPNLYTENPVVQISAGTDEDTETIKNQVESILKNANMDYKSLVVERDGVEVVFSST
DSQLLARDVIKNSLGSDYTVALNLAPSTPAWLEAIHADPMKQGLDLRGGVHFLLEVDVESVISRRYEGIMKNIGQELREA
GIRYSGIRYLSDKGIELRFRDSDSMENALVELRQKISDVVFVKTKTQNSILGAISPAELNSIRQNTIEQTMSILRNRVNE
LGVGEAVVQQQGATRVAVDLPGIQDAARAKQILGGTATLEFHLVDQENDPFIAKQTGVVPVNDKLYMMDGHPILLKRQVV
LSGDSITSAVSSFDQQTASPSVQIQLGGGGESLFTKVTRENIGKRMAIVFVETKTTTQTINGEEKRVTKKEERVISAPVI
QNALGSNFQITGLTDSKEASNLALLLRAGALPAAIYPVEERTVGPTLGKENIRRGLISLEVGMGLILVLMLVYYHFFGLI
ADIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDANVLIYERIREELRNGLSPQAAIHAGYERAFSTILDANVT
TLIVAIILFAVGTGPVRGFAVVLSLGLLTSMLTGITYTRAIVNWYYGGRNVKKLSIGI

Sequences:

>Translated_618_residues
MQNKYPLWKNLMLIVIAVIGFVYAIPNLYTENPVVQISAGTDEDTETIKNQVESILKNANMDYKSLVVERDGVEVVFSST
DSQLLARDVIKNSLGSDYTVALNLAPSTPAWLEAIHADPMKQGLDLRGGVHFLLEVDVESVISRRYEGIMKNIGQELREA
GIRYSGIRYLSDKGIELRFRDSDSMENALVELRQKISDVVFVKTKTQNSILGAISPAELNSIRQNTIEQTMSILRNRVNE
LGVGEAVVQQQGATRVAVDLPGIQDAARAKQILGGTATLEFHLVDQENDPFIAKQTGVVPVNDKLYMMDGHPILLKRQVV
LSGDSITSAVSSFDQQTASPSVQIQLGGGGESLFTKVTRENIGKRMAIVFVETKTTTQTINGEEKRVTKKEERVISAPVI
QNALGSNFQITGLTDSKEASNLALLLRAGALPAAIYPVEERTVGPTLGKENIRRGLISLEVGMGLILVLMLVYYHFFGLI
ADIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDANVLIYERIREELRNGLSPQAAIHAGYERAFSTILDANVT
TLIVAIILFAVGTGPVRGFAVVLSLGLLTSMLTGITYTRAIVNWYYGGRNVKKLSIGI
>Mature_618_residues
MQNKYPLWKNLMLIVIAVIGFVYAIPNLYTENPVVQISAGTDEDTETIKNQVESILKNANMDYKSLVVERDGVEVVFSST
DSQLLARDVIKNSLGSDYTVALNLAPSTPAWLEAIHADPMKQGLDLRGGVHFLLEVDVESVISRRYEGIMKNIGQELREA
GIRYSGIRYLSDKGIELRFRDSDSMENALVELRQKISDVVFVKTKTQNSILGAISPAELNSIRQNTIEQTMSILRNRVNE
LGVGEAVVQQQGATRVAVDLPGIQDAARAKQILGGTATLEFHLVDQENDPFIAKQTGVVPVNDKLYMMDGHPILLKRQVV
LSGDSITSAVSSFDQQTASPSVQIQLGGGGESLFTKVTRENIGKRMAIVFVETKTTTQTINGEEKRVTKKEERVISAPVI
QNALGSNFQITGLTDSKEASNLALLLRAGALPAAIYPVEERTVGPTLGKENIRRGLISLEVGMGLILVLMLVYYHFFGLI
ADIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDANVLIYERIREELRNGLSPQAAIHAGYERAFSTILDANVT
TLIVAIILFAVGTGPVRGFAVVLSLGLLTSMLTGITYTRAIVNWYYGGRNVKKLSIGI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=620, Percent_Identity=48.0645161290323, Blast_Score=558, Evalue=1e-160,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 67332; Mature: 67332

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNKYPLWKNLMLIVIAVIGFVYAIPNLYTENPVVQISAGTDEDTETIKNQVESILKNAN
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
MDYKSLVVERDGVEVVFSSTDSQLLARDVIKNSLGSDYTVALNLAPSTPAWLEAIHADPM
CCHHHHEEECCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCHH
KQGLDLRGGVHFLLEVDVESVISRRYEGIMKNIGQELREAGIRYSGIRYLSDKGIELRFR
HCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEC
DSDSMENALVELRQKISDVVFVKTKTQNSILGAISPAELNSIRQNTIEQTMSILRNRVNE
CCCHHHHHHHHHHHHHCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
LGVGEAVVQQQGATRVAVDLPGIQDAARAKQILGGTATLEFHLVDQENDPFIAKQTGVVP
CCCCHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEEECCCCCCEEEECCCEEE
VNDKLYMMDGHPILLKRQVVLSGDSITSAVSSFDQQTASPSVQIQLGGGGESLFTKVTRE
CCCEEEEECCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
NIGKRMAIVFVETKTTTQTINGEEKRVTKKEERVISAPVIQNALGSNFQITGLTDSKEAS
HCCCEEEEEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
NLALLLRAGALPAAIYPVEERTVGPTLGKENIRRGLISLEVGMGLILVLMLVYYHFFGLI
CEEEEEECCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDANVLIYERIREELRNGLSPQ
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCH
AAIHAGYERAFSTILDANVTTLIVAIILFAVGTGPVRGFAVVLSLGLLTSMLTGITYTRA
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IVNWYYGGRNVKKLSIGI
HHHHHCCCCCEEEEECCC
>Mature Secondary Structure
MQNKYPLWKNLMLIVIAVIGFVYAIPNLYTENPVVQISAGTDEDTETIKNQVESILKNAN
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
MDYKSLVVERDGVEVVFSSTDSQLLARDVIKNSLGSDYTVALNLAPSTPAWLEAIHADPM
CCHHHHEEECCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCHH
KQGLDLRGGVHFLLEVDVESVISRRYEGIMKNIGQELREAGIRYSGIRYLSDKGIELRFR
HCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEC
DSDSMENALVELRQKISDVVFVKTKTQNSILGAISPAELNSIRQNTIEQTMSILRNRVNE
CCCHHHHHHHHHHHHHCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
LGVGEAVVQQQGATRVAVDLPGIQDAARAKQILGGTATLEFHLVDQENDPFIAKQTGVVP
CCCCHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEEECCCCCCEEEECCCEEE
VNDKLYMMDGHPILLKRQVVLSGDSITSAVSSFDQQTASPSVQIQLGGGGESLFTKVTRE
CCCEEEEECCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
NIGKRMAIVFVETKTTTQTINGEEKRVTKKEERVISAPVIQNALGSNFQITGLTDSKEAS
HCCCEEEEEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
NLALLLRAGALPAAIYPVEERTVGPTLGKENIRRGLISLEVGMGLILVLMLVYYHFFGLI
CEEEEEECCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDANVLIYERIREELRNGLSPQ
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCH
AAIHAGYERAFSTILDANVTTLIVAIILFAVGTGPVRGFAVVLSLGLLTSMLTGITYTRA
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IVNWYYGGRNVKKLSIGI
HHHHHCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]