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The map label for this gene is 52842210

Identifier: 52842210

GI number: 52842210

Start: 2233519

End: 2234397

Strand: Direct

Name: 52842210

Synonym: lpg1993

Alternate gene names: NA

Gene position: 2233519-2234397 (Clockwise)

Preceding gene: 52842206

Following gene: 52842215

Centisome position: 65.74

GC content: 37.43

Gene sequence:

>879_bases
TTGAAAAGAGGGGAAAATATGTTAAAACGTCTACTCGGTGTAGCATCATTATTTTTAATATTGAACCACCAATGCTTCGC
TGAAGATCATGAAATTGCCATTACTATTGACGATTTACCTTTTGTGGGCTCTGGAACAAATACTCCAGGAAATCTGAAGC
GAACCCAGGAAAGATTTATGGCCATAGTGAACACTTTGGTTGACAATCAGGTTCCTGCCACAGGTTTTGCCATAGGAGGG
GCTATAGCGAAAAATGAATGGGAGCTTCTGGAAATTTTTCGTAATCAAGGTTTTTCAATTGGCAATCATACCTATAAGCA
TCGAAGTTTAAATTCAATGACTGCAGAAAATTATATTGCTGATATCGAAAAAGCGGATACCGTTCTATCCCCTGTTATGA
CTGAGCCAAAATATTTCCGTTATCCTTATCTTGCTGAAGGCAGTGGAGAAAAGAAGCAAAAAGTGCATGAGTGGCTGGCT
GCCCATCAATACACGATTGCTCCTGTCACTATAGATAGCAAAGATTATGAATTCAATGCGCAATTTTATAGAATACCATA
TAGACAAAGACCACAACGTTTAGCTCAATTTAAAAAACGCTATCTTGCTTTTATCTGGCAACAGACCCTGAGAGCAGAAA
AAAAAGTCAAGAAAGTAGAAGGACAACCTGTTAAACATATTTTACTCATCCATGCGAATCTGATTAATAGTTTGTGTTTG
GCGGATATCATTGAAATGTATAGAAGCAACGGTTATAAATTCATTACTCTGCAAGAGGCTCTAAAAGGGAATACAGCTAC
TCCAGTTAATGATTCATCACCAACTGAAGCTTTGAAATCGGAAACCGAAAAGAAAGAAATTAATGAGCCTCAATCTTAA

Upstream 100 bases:

>100_bases
TAAACCCTCTCAAAATACATACATATTTTCAAACAGGTGGAAATTTAATTTATCGTCTATAGTTAAATTAAATGCCTAAA
ATAATAAGAAATTTTCCAAA

Downstream 100 bases:

>100_bases
AAACATAGAGTTATTTCTTGAAACAAATGATTTACAATGCTATCCGGGATTCATTGTCACAGGACTGGTGAATCCCAATA
GCCAAATAAAAAATTGCAAA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Polysaccharide Deacetylase-Related Protein; Polysaccharide Deacetylase Family Protein; Polysaccharide Deacetylase Domain Protein; Peptidoglycan GlcNAc Deacetylase Proteins; Polysaccharide Deacetylase Family

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MKRGENMLKRLLGVASLFLILNHQCFAEDHEIAITIDDLPFVGSGTNTPGNLKRTQERFMAIVNTLVDNQVPATGFAIGG
AIAKNEWELLEIFRNQGFSIGNHTYKHRSLNSMTAENYIADIEKADTVLSPVMTEPKYFRYPYLAEGSGEKKQKVHEWLA
AHQYTIAPVTIDSKDYEFNAQFYRIPYRQRPQRLAQFKKRYLAFIWQQTLRAEKKVKKVEGQPVKHILLIHANLINSLCL
ADIIEMYRSNGYKFITLQEALKGNTATPVNDSSPTEALKSETEKKEINEPQS

Sequences:

>Translated_292_residues
MKRGENMLKRLLGVASLFLILNHQCFAEDHEIAITIDDLPFVGSGTNTPGNLKRTQERFMAIVNTLVDNQVPATGFAIGG
AIAKNEWELLEIFRNQGFSIGNHTYKHRSLNSMTAENYIADIEKADTVLSPVMTEPKYFRYPYLAEGSGEKKQKVHEWLA
AHQYTIAPVTIDSKDYEFNAQFYRIPYRQRPQRLAQFKKRYLAFIWQQTLRAEKKVKKVEGQPVKHILLIHANLINSLCL
ADIIEMYRSNGYKFITLQEALKGNTATPVNDSSPTEALKSETEKKEINEPQS
>Mature_292_residues
MKRGENMLKRLLGVASLFLILNHQCFAEDHEIAITIDDLPFVGSGTNTPGNLKRTQERFMAIVNTLVDNQVPATGFAIGG
AIAKNEWELLEIFRNQGFSIGNHTYKHRSLNSMTAENYIADIEKADTVLSPVMTEPKYFRYPYLAEGSGEKKQKVHEWLA
AHQYTIAPVTIDSKDYEFNAQFYRIPYRQRPQRLAQFKKRYLAFIWQQTLRAEKKVKKVEGQPVKHILLIHANLINSLCL
ADIIEMYRSNGYKFITLQEALKGNTATPVNDSSPTEALKSETEKKEINEPQS

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33354; Mature: 33354

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRGENMLKRLLGVASLFLILNHQCFAEDHEIAITIDDLPFVGSGTNTPGNLKRTQERFM
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHH
AIVNTLVDNQVPATGFAIGGAIAKNEWELLEIFRNQGFSIGNHTYKHRSLNSMTAENYIA
HHHHHHHCCCCCCCHHHHCCHHCCCHHHHHHHHHHCCCCCCCCCHHHHCHHHHHHHHHHH
DIEKADTVLSPVMTEPKYFRYPYLAEGSGEKKQKVHEWLAAHQYTIAPVTIDSKDYEFNA
HHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHCCEEEEEEEECCCCCEECC
QFYRIPYRQRPQRLAQFKKRYLAFIWQQTLRAEKKVKKVEGQPVKHILLIHANLINSLCL
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
ADIIEMYRSNGYKFITLQEALKGNTATPVNDSSPTEALKSETEKKEINEPQS
HHHHHHHHCCCCEEEEEHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKRGENMLKRLLGVASLFLILNHQCFAEDHEIAITIDDLPFVGSGTNTPGNLKRTQERFM
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHH
AIVNTLVDNQVPATGFAIGGAIAKNEWELLEIFRNQGFSIGNHTYKHRSLNSMTAENYIA
HHHHHHHCCCCCCCHHHHCCHHCCCHHHHHHHHHHCCCCCCCCCHHHHCHHHHHHHHHHH
DIEKADTVLSPVMTEPKYFRYPYLAEGSGEKKQKVHEWLAAHQYTIAPVTIDSKDYEFNA
HHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHCCEEEEEEEECCCCCEECC
QFYRIPYRQRPQRLAQFKKRYLAFIWQQTLRAEKKVKKVEGQPVKHILLIHANLINSLCL
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
ADIIEMYRSNGYKFITLQEALKGNTATPVNDSSPTEALKSETEKKEINEPQS
HHHHHHHHCCCCEEEEEHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA