Click here to switch to the map view.

The map label for this gene is 52842152

Identifier: 52842152

GI number: 52842152

Start: 2160204

End: 2160485

Strand: Reverse

Name: 52842152

Synonym: lpg1935

Alternate gene names: NA

Gene position: 2160485-2160204 (Counterclockwise)

Preceding gene: 52842153

Following gene: 52842151

Centisome position: 63.59

GC content: 37.59

Gene sequence:

>282_bases
ATGGCTAAGCAAATAAAAAAATTAAAGACGCCTGACCTTCAACAACCATTAACTGCGGAATTGTTAGGGGAAGTCATTAA
AGCACGTCGAACTCAAAGCAATTTGCGGTTAGAAGATGCGGCTGCTTTATGTGGTGTTGCCAAAGAAACCTTTATGAAAA
TCGAGCATGGGCAATCGAACTGTCAATTGGCAAGTGTATTACAAATTTGTTCTGGTTTAGGAATAAATCTTTACATAAAA
CCTTGGATGGATAATGGTGAGGATGAAAATGATTGGAGATAA

Upstream 100 bases:

>100_bases
AATGATTTACTATTGTATATTTGAAATTAATCCTACTATAATAGGATTAATTAACAAATTAAATCGAAATCTTAGATTAA
GTCTACTTTAGTAGGATTAT

Downstream 100 bases:

>100_bases
GTCAGTCTTGGATGTTTATCTCGGTGAAAGTCAAATAGCCAACATCACACTTATCGATGATCAACTGTATTGGAGTTATC
ATGAAAGTTGGCAACAGACA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 93; Mature: 92

Protein sequence:

>93_residues
MAKQIKKLKTPDLQQPLTAELLGEVIKARRTQSNLRLEDAAALCGVAKETFMKIEHGQSNCQLASVLQICSGLGINLYIK
PWMDNGEDENDWR

Sequences:

>Translated_93_residues
MAKQIKKLKTPDLQQPLTAELLGEVIKARRTQSNLRLEDAAALCGVAKETFMKIEHGQSNCQLASVLQICSGLGINLYIK
PWMDNGEDENDWR
>Mature_92_residues
AKQIKKLKTPDLQQPLTAELLGEVIKARRTQSNLRLEDAAALCGVAKETFMKIEHGQSNCQLASVLQICSGLGINLYIKP
WMDNGEDENDWR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10427; Mature: 10296

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQIKKLKTPDLQQPLTAELLGEVIKARRTQSNLRLEDAAALCGVAKETFMKIEHGQSN
CCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
CQLASVLQICSGLGINLYIKPWMDNGEDENDWR
CHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
AKQIKKLKTPDLQQPLTAELLGEVIKARRTQSNLRLEDAAALCGVAKETFMKIEHGQSN
CCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
CQLASVLQICSGLGINLYIKPWMDNGEDENDWR
CHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA