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The map label for this gene is ytfM [H]

Identifier: 52842033

GI number: 52842033

Start: 2016663

End: 2018351

Strand: Direct

Name: ytfM [H]

Synonym: lpg1806

Alternate gene names: 52842033

Gene position: 2016663-2018351 (Clockwise)

Preceding gene: 52842032

Following gene: 52842034

Centisome position: 59.35

GC content: 38.48

Gene sequence:

>1689_bases
ATGAATAGGTTTGCATATTTAATCATACTAATCATTTTGTATTTTCCATTGTTTGCTCAGGACAAAAAGGCCGGGCTGCT
TGAGATTGATGGTATAAAAGGAAAAGTTCTTGCTAATGTGGAAACTCGTTTAGGTGAATTGAGCCAAATTAAACCTTTAA
GCCAATTTACCCCAACTGAACTTCAAGACCAAATTAATAAAGCCATTCAACCATTTGGATATTTCAATGCGGAAACCAGT
ATTAATAACCTCAACAATAAAATAATAATAAAAGTTCAACCTGGGTCTCAAATTCGTATTGCCTCCATTAAAGCGATGCT
AACAGGAGAGGGAGCACAAAATCCATTATTACGAAAAACTCTGAAAGAGTTACCTCTGCATATTGGAGATCCTCTGTTTT
CAGAACAATACGAAAAAGCAAAACAAAATATTATAAATACCGCAGAAAATATGGGATATTTACACGGCGTATTTAAAAAA
GCTGAAATATTGATAGATGAACACAAAAAATCGGCTCAAATCACCCTGATTTTTGATACGGGGCCCCAATACTATTTTGG
CCAGGTGCAATTTGACCCAACCTATATTTCTCCTCAGCTATTACATCGTTTCGTACCATTTGATCCTGGCCAACCTTATG
CCACAGATCAAGTTTTGAAATTGAATGATTATTTATCGAACAGCGGTTACTTTAGTTCTGTACTGGTAAAACCCCAAATT
ACTGACGCCCAAACAGTACCGGTCATTGTTCATTTGCAACCTGTACCTAAATATTCCTATTCATTTGGCCTTGGCTATGG
AACAGACACAGGAGTGCGTGGAAAAGCAGCTCTTCATGTGATTCCAGTCAATCGCCAAGGACATAAGTTTAATGCCGTAG
CGCAAGGCTCTTTCAGGCAAAACGCCTTACAAGCCCAATATGTAATCCCCGGAAAAAACCCTGTTACCGATCAATATGCC
TTGACCGGTAATTTTTCAAATTTAAACTATAATGCAGGTTATAGTAATGCTACTCTCTTATCCCTGAGCCAATTGCATAA
TGTGAATCAATTTCAAAGAGCGCTTTCACTGAATGCTCTGTATGAAAGTTTTCATTACTCTCTACAACCCAATACGGATC
AGTTTTTGCTCTACCCCAAAGCCAATATCACTTTCAGTAAAACTAAAAATCTCTTGTTTTCGCCATCAGGGTATAATATT
ACTTTTAACGCGCTTGGGGCGAATAAGGCTGTCCTCTCCCATCTGAACTTTGGACAACTTTCACTGGATGCCAAAGCCGC
GCTCACATTGGATTCACTGCATTTGCGCCTGTATGGGCATACCATCCAAGGTATTACAGCAATCAATGATATCAATGAAT
TACCGCTTTCCCTGGCATTACTTCTGGGAGGAACTGACAACCTTAAAGCCTATAGTTTTAACTCTATCGGACCAGGAAAA
ATTATCACTTATGGTGGCTTTGAAATTCAAAAAGAATTCAAAAAAAACTGGTATCTTGTTGGATTTTACGATGCTGGAGA
TGTTTACAATCCATCCGTTAAAAACATTCAATACGATATTGGAGGCGGTCTGATGTGGGTTTCCCCTATTGGGCCAATTA
AAGTTGGATTAGCCCAATCAGTCGATAATAAGATGGAGAGAATAGGACACAATCCAAGATTGGTTATCAGTATGGGACCA
GACTTATGA

Upstream 100 bases:

>100_bases
AATTGATCCAGATAGATTAACTGCCAAAGAAGCGTTGGATTTAATTTATAAGTTAAAACACCTGGAGTGTGCCGAGAGCA
TCAATTGATGTAGTTATTAC

Downstream 100 bases:

>100_bases
TGATATTAAAATTTATAAAAAAAGGATTTTACTACTGCTTAATAACAGCAATATGTCTGGTTAGTTTGATTATCTTTTTG
ATTTCAACTACCCCGGGGCT

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 562; Mature: 562

Protein sequence:

>562_residues
MNRFAYLIILIILYFPLFAQDKKAGLLEIDGIKGKVLANVETRLGELSQIKPLSQFTPTELQDQINKAIQPFGYFNAETS
INNLNNKIIIKVQPGSQIRIASIKAMLTGEGAQNPLLRKTLKELPLHIGDPLFSEQYEKAKQNIINTAENMGYLHGVFKK
AEILIDEHKKSAQITLIFDTGPQYYFGQVQFDPTYISPQLLHRFVPFDPGQPYATDQVLKLNDYLSNSGYFSSVLVKPQI
TDAQTVPVIVHLQPVPKYSYSFGLGYGTDTGVRGKAALHVIPVNRQGHKFNAVAQGSFRQNALQAQYVIPGKNPVTDQYA
LTGNFSNLNYNAGYSNATLLSLSQLHNVNQFQRALSLNALYESFHYSLQPNTDQFLLYPKANITFSKTKNLLFSPSGYNI
TFNALGANKAVLSHLNFGQLSLDAKAALTLDSLHLRLYGHTIQGITAINDINELPLSLALLLGGTDNLKAYSFNSIGPGK
IITYGGFEIQKEFKKNWYLVGFYDAGDVYNPSVKNIQYDIGGGLMWVSPIGPIKVGLAQSVDNKMERIGHNPRLVISMGP
DL

Sequences:

>Translated_562_residues
MNRFAYLIILIILYFPLFAQDKKAGLLEIDGIKGKVLANVETRLGELSQIKPLSQFTPTELQDQINKAIQPFGYFNAETS
INNLNNKIIIKVQPGSQIRIASIKAMLTGEGAQNPLLRKTLKELPLHIGDPLFSEQYEKAKQNIINTAENMGYLHGVFKK
AEILIDEHKKSAQITLIFDTGPQYYFGQVQFDPTYISPQLLHRFVPFDPGQPYATDQVLKLNDYLSNSGYFSSVLVKPQI
TDAQTVPVIVHLQPVPKYSYSFGLGYGTDTGVRGKAALHVIPVNRQGHKFNAVAQGSFRQNALQAQYVIPGKNPVTDQYA
LTGNFSNLNYNAGYSNATLLSLSQLHNVNQFQRALSLNALYESFHYSLQPNTDQFLLYPKANITFSKTKNLLFSPSGYNI
TFNALGANKAVLSHLNFGQLSLDAKAALTLDSLHLRLYGHTIQGITAINDINELPLSLALLLGGTDNLKAYSFNSIGPGK
IITYGGFEIQKEFKKNWYLVGFYDAGDVYNPSVKNIQYDIGGGLMWVSPIGPIKVGLAQSVDNKMERIGHNPRLVISMGP
DL
>Mature_562_residues
MNRFAYLIILIILYFPLFAQDKKAGLLEIDGIKGKVLANVETRLGELSQIKPLSQFTPTELQDQINKAIQPFGYFNAETS
INNLNNKIIIKVQPGSQIRIASIKAMLTGEGAQNPLLRKTLKELPLHIGDPLFSEQYEKAKQNIINTAENMGYLHGVFKK
AEILIDEHKKSAQITLIFDTGPQYYFGQVQFDPTYISPQLLHRFVPFDPGQPYATDQVLKLNDYLSNSGYFSSVLVKPQI
TDAQTVPVIVHLQPVPKYSYSFGLGYGTDTGVRGKAALHVIPVNRQGHKFNAVAQGSFRQNALQAQYVIPGKNPVTDQYA
LTGNFSNLNYNAGYSNATLLSLSQLHNVNQFQRALSLNALYESFHYSLQPNTDQFLLYPKANITFSKTKNLLFSPSGYNI
TFNALGANKAVLSHLNFGQLSLDAKAALTLDSLHLRLYGHTIQGITAINDINELPLSLALLLGGTDNLKAYSFNSIGPGK
IITYGGFEIQKEFKKNWYLVGFYDAGDVYNPSVKNIQYDIGGGLMWVSPIGPIKVGLAQSVDNKMERIGHNPRLVISMGP
DL

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=560, Percent_Identity=27.1428571428571, Blast_Score=187, Evalue=1e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 62331; Mature: 62331

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRFAYLIILIILYFPLFAQDKKAGLLEIDGIKGKVLANVETRLGELSQIKPLSQFTPTE
CCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEHHHHHCCHHHCCCCCCCCCHH
LQDQINKAIQPFGYFNAETSINNLNNKIIIKVQPGSQIRIASIKAMLTGEGAQNPLLRKT
HHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCHHHHHH
LKELPLHIGDPLFSEQYEKAKQNIINTAENMGYLHGVFKKAEILIDEHKKSAQITLIFDT
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEEEEEC
GPQYYFGQVQFDPTYISPQLLHRFVPFDPGQPYATDQVLKLNDYLSNSGYFSSVLVKPQI
CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCEEEEHHHHCCCCCEEEEEEECCC
TDAQTVPVIVHLQPVPKYSYSFGLGYGTDTGVRGKAALHVIPVNRQGHKFNAVAQGSFRQ
CCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCC
NALQAQYVIPGKNPVTDQYALTGNFSNLNYNAGYSNATLLSLSQLHNVNQFQRALSLNAL
CCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEHHHHHCHHHHHHHHHHHHH
YESFHYSLQPNTDQFLLYPKANITFSKTKNLLFSPSGYNITFNALGANKAVLSHLNFGQL
HHHHEEEECCCCCCEEEEECCCEEEECCCCEEECCCCCEEEEEECCCCHHHHHHCCCCCE
SLDAKAALTLDSLHLRLYGHTIQGITAINDINELPLSLALLLGGTDNLKAYSFNSIGPGK
EECCEEEEEEEEEEEEEEEEEECCEEEECCHHHCCCEEEEEECCCCCCEEEEECCCCCCC
IITYGGFEIQKEFKKNWYLVGFYDAGDVYNPSVKNIQYDIGGGLMWVSPIGPIKVGLAQS
EEEECCHHHHHHHHCCEEEEEEECCCCCCCCCCCEEEEECCCCEEEECCCCCEEHHHHHH
VDNKMERIGHNPRLVISMGPDL
HHHHHHHCCCCCEEEEEECCCC
>Mature Secondary Structure
MNRFAYLIILIILYFPLFAQDKKAGLLEIDGIKGKVLANVETRLGELSQIKPLSQFTPTE
CCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEHHHHHCCHHHCCCCCCCCCHH
LQDQINKAIQPFGYFNAETSINNLNNKIIIKVQPGSQIRIASIKAMLTGEGAQNPLLRKT
HHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCHHHHHH
LKELPLHIGDPLFSEQYEKAKQNIINTAENMGYLHGVFKKAEILIDEHKKSAQITLIFDT
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEEEEEC
GPQYYFGQVQFDPTYISPQLLHRFVPFDPGQPYATDQVLKLNDYLSNSGYFSSVLVKPQI
CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCEEEEHHHHCCCCCEEEEEEECCC
TDAQTVPVIVHLQPVPKYSYSFGLGYGTDTGVRGKAALHVIPVNRQGHKFNAVAQGSFRQ
CCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCC
NALQAQYVIPGKNPVTDQYALTGNFSNLNYNAGYSNATLLSLSQLHNVNQFQRALSLNAL
CCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEHHHHHCHHHHHHHHHHHHH
YESFHYSLQPNTDQFLLYPKANITFSKTKNLLFSPSGYNITFNALGANKAVLSHLNFGQL
HHHHEEEECCCCCCEEEEECCCEEEECCCCEEECCCCCEEEEEECCCCHHHHHHCCCCCE
SLDAKAALTLDSLHLRLYGHTIQGITAINDINELPLSLALLLGGTDNLKAYSFNSIGPGK
EECCEEEEEEEEEEEEEEEEEECCEEEECCHHHCCCEEEEEECCCCCCEEEEECCCCCCC
IITYGGFEIQKEFKKNWYLVGFYDAGDVYNPSVKNIQYDIGGGLMWVSPIGPIKVGLAQS
EEEECCHHHHHHHHCCEEEEEEECCCCCCCCCCCEEEEECCCCEEEECCCCCEEHHHHHH
VDNKMERIGHNPRLVISMGPDL
HHHHHHHCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]