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The map label for this gene is 52841937

Identifier: 52841937

GI number: 52841937

Start: 1905680

End: 1906420

Strand: Direct

Name: 52841937

Synonym: lpg1709

Alternate gene names: NA

Gene position: 1905680-1906420 (Clockwise)

Preceding gene: 52841936

Following gene: 52841943

Centisome position: 56.09

GC content: 35.63

Gene sequence:

>741_bases
TTGAGTATCCGAGTCATGTGGAAAACAAAATTCGGCAAATGTATCTATATTTCACCGTCAGGATATAAAGTCTATCAAAA
TTTGTTGTACCGTTGGCTTACTTTAGGTAGCGAAGCATGGCAAACTGTAATTAACCGTTATATACCTCGCAGGCCTGGTT
TACATTATCTGCAAATTCTGACACTTATGGCGCGAAAATTTCCTAATGATTGTTGTTTATTAGGACTTGGAGGAGCAGGA
ATCGCTCACCTGCTGGGTGCACAAAAAACCATACGCTCTATCGTTGCCGTGGAAAGTAGTGAAGAAGTGATTCAAATTGC
CAAAAAATTTTTCATGACAGATTTAATTCCTCATTTCACCATTACTCACCAAAACGCCCGAGATTTTGTACGTGAAAACA
AAAAGACTTTTCAGCACATGCTTCTTGATCTATATGACGCAACACATTTTCCCGATGAGTGTCATTCTATGGATTTCTTC
ATTCATTGTAAAAAACAATTAACTGACGATGGATTTTTAGCTGTTAACTTAGCAAATTCCCAAGAACAATGGGCTCTGGT
CCAACTAATCAAGAAACAATTTCCATCCAATATCATTATTCCAATAAAAAAATGTGCCAATATTGTTGTCATTGCCTCCA
AAAATGACAACAAAGACTTGTTTATTAAACAAGTCAGGAATACTAATGAAATAAAAAAAATTACATGGGTAAAAGATTGG
GGTTATGTTGCTGAATATTAA

Upstream 100 bases:

>100_bases
TCCCCGATTTAGCTGATCCGCAACTATTATATGAATGTCTGGATGCATTGGATGAATTAACTCAGATCTTGAAATTAGGC
TCAATATATCCCTTTCAATC

Downstream 100 bases:

>100_bases
TGTTCATTGAAAGGAAACAATAGTTTATTTACAAATGAAACCCAGCCAAAAGCTGGTATGTATTTAAATATTTTATCTTA
TTTTCGCATGTAATTAATCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MSIRVMWKTKFGKCIYISPSGYKVYQNLLYRWLTLGSEAWQTVINRYIPRRPGLHYLQILTLMARKFPNDCCLLGLGGAG
IAHLLGAQKTIRSIVAVESSEEVIQIAKKFFMTDLIPHFTITHQNARDFVRENKKTFQHMLLDLYDATHFPDECHSMDFF
IHCKKQLTDDGFLAVNLANSQEQWALVQLIKKQFPSNIIIPIKKCANIVVIASKNDNKDLFIKQVRNTNEIKKITWVKDW
GYVAEY

Sequences:

>Translated_246_residues
MSIRVMWKTKFGKCIYISPSGYKVYQNLLYRWLTLGSEAWQTVINRYIPRRPGLHYLQILTLMARKFPNDCCLLGLGGAG
IAHLLGAQKTIRSIVAVESSEEVIQIAKKFFMTDLIPHFTITHQNARDFVRENKKTFQHMLLDLYDATHFPDECHSMDFF
IHCKKQLTDDGFLAVNLANSQEQWALVQLIKKQFPSNIIIPIKKCANIVVIASKNDNKDLFIKQVRNTNEIKKITWVKDW
GYVAEY
>Mature_245_residues
SIRVMWKTKFGKCIYISPSGYKVYQNLLYRWLTLGSEAWQTVINRYIPRRPGLHYLQILTLMARKFPNDCCLLGLGGAGI
AHLLGAQKTIRSIVAVESSEEVIQIAKKFFMTDLIPHFTITHQNARDFVRENKKTFQHMLLDLYDATHFPDECHSMDFFI
HCKKQLTDDGFLAVNLANSQEQWALVQLIKKQFPSNIIIPIKKCANIVVIASKNDNKDLFIKQVRNTNEIKKITWVKDWG
YVAEY

Specific function: Unknown

COG id: COG0421

COG function: function code E; Spermidine synthase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28544; Mature: 28413

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRVMWKTKFGKCIYISPSGYKVYQNLLYRWLTLGSEAWQTVINRYIPRRPGLHYLQIL
CEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHH
TLMARKFPNDCCLLGLGGAGIAHLLGAQKTIRSIVAVESSEEVIQIAKKFFMTDLIPHFT
HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEE
ITHQNARDFVRENKKTFQHMLLDLYDATHFPDECHSMDFFIHCKKQLTDDGFLAVNLANS
EECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHEEEEHHHCCCCCEEEEEECCC
QEQWALVQLIKKQFPSNIIIPIKKCANIVVIASKNDNKDLFIKQVRNTNEIKKITWVKDW
CHHHHHHHHHHHHCCCCEEEEEHHHCCEEEEEECCCCCHHHHHHHCCCCCHHEEEEEECC
GYVAEY
CCCCCC
>Mature Secondary Structure 
SIRVMWKTKFGKCIYISPSGYKVYQNLLYRWLTLGSEAWQTVINRYIPRRPGLHYLQIL
EEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHH
TLMARKFPNDCCLLGLGGAGIAHLLGAQKTIRSIVAVESSEEVIQIAKKFFMTDLIPHFT
HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEE
ITHQNARDFVRENKKTFQHMLLDLYDATHFPDECHSMDFFIHCKKQLTDDGFLAVNLANS
EECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHEEEEHHHCCCCCEEEEEECCC
QEQWALVQLIKKQFPSNIIIPIKKCANIVVIASKNDNKDLFIKQVRNTNEIKKITWVKDW
CHHHHHHHHHHHHCCCCEEEEEHHHCCEEEEEECCCCCHHHHHHHCCCCCHHEEEEEECC
GYVAEY
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA