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The map label for this gene is truD [H]

Identifier: 52841851

GI number: 52841851

Start: 1791933

End: 1792964

Strand: Reverse

Name: truD [H]

Synonym: lpg1623

Alternate gene names: 52841851

Gene position: 1792964-1791933 (Counterclockwise)

Preceding gene: 52841853

Following gene: 52841850

Centisome position: 52.77

GC content: 39.15

Gene sequence:

>1032_bases
TTGAAGGAGATCTTGATGTACTCTTTAGATTGGCCACGTGCCTATGGTATTCCAAATTCTACAGCTACTTTTAAGTTGTT
TCCGGAAGATTTTCAAGTGAATGAATTGTTTGAAGGACAGTTTAGCGGTGAAGGAGAACACATAGTTCTTAAAATTGAAA
AAAGAGGATTAACCACGGAAGAAGTTGTCAAATCATTGGCCAGGCTAATTAACAAACCTATAAAACTTATCAGTTACGCT
GGATTAAAAGACAAACAGGCATTAACAACGCAATGGCTTAGTGTTCATGCACCCGGGGAGATAATCGATGGCATAGAAAC
ACTTGAAGCACCAGGTTGGAGAATACTGGAGTGCACACGTCATAACAAAAAACTCAAACCAGGTTTTTTATCGGGCAATC
ATTTTATAATCACTTTAAGAAATGTCTCTGATGAGAGTGATCTAGTGCATCGTATTGAACAAATTAAATTCAAAGGTGTT
CCAAATTATTTCGGTGAGCAGCGTTTTGGTCGAGATGGTGGAAATTTAATTAAAGCAGAGGAAATACTAGTACAGGGGCG
CAAAGTAAAGGATAGATTTTTAAAAGGAATGTATTTTTCCGCAGCCCGATCATGGCTATATAATTTGATCCTGTCTCGCC
GTGTAAAGGAATCATCATGGAATTTGCCCTTATTGGGGGATGTCATACAGCTTGTTGGATCAAACAGTATATTTGTTAAT
GATAAAAGCATGGATGAGCAATTATTGCAACGAATCGGTGACAAAGATGTTTCTCCAGCAAGCCCTCTGCCTGGCAGGAG
TAAGAATCTTGTAAAAGGGACAGCTTTGCAAATAATAAACGACGTTTATGAAGAGTGGTCTGCCTGGCTTGATGGGTTAG
AAAAAAATGGTTTGGAAGAAGCCTGGCGTGCAAATATCCTTTATGCAGAGCAGATTGAATATAGGATAAACCAAGGTACA
GTTGAGCTTTCGTTTGTCTTGCCGGCTGGTGCTTACGCGACAGTGGTATTACGTGAATTGGTTCAATATTAA

Upstream 100 bases:

>100_bases
TCAAACGATGTTAAGATAAATAATGTATCAGCTAAACCAATAAGTTCTGAATCTCTTGATATCATAGTGAATTTGTAGAT
TTAGTTTAGAACCCTTTTTA

Downstream 100 bases:

>100_bases
GCTTTGTTTGCACTTGAATAGCACTTTAGTCAATGTGGAGTAATTATTTTTAATTGAATTGATGAATTAATCACTATGTT
TGATGTTATGCCATAATAAA

Product: hydrogenase

Products: NA

Alternate protein names: tRNA pseudouridylate synthase D; tRNA-uridine isomerase D [H]

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MKEILMYSLDWPRAYGIPNSTATFKLFPEDFQVNELFEGQFSGEGEHIVLKIEKRGLTTEEVVKSLARLINKPIKLISYA
GLKDKQALTTQWLSVHAPGEIIDGIETLEAPGWRILECTRHNKKLKPGFLSGNHFIITLRNVSDESDLVHRIEQIKFKGV
PNYFGEQRFGRDGGNLIKAEEILVQGRKVKDRFLKGMYFSAARSWLYNLILSRRVKESSWNLPLLGDVIQLVGSNSIFVN
DKSMDEQLLQRIGDKDVSPASPLPGRSKNLVKGTALQIINDVYEEWSAWLDGLEKNGLEEAWRANILYAEQIEYRINQGT
VELSFVLPAGAYATVVLRELVQY

Sequences:

>Translated_343_residues
MKEILMYSLDWPRAYGIPNSTATFKLFPEDFQVNELFEGQFSGEGEHIVLKIEKRGLTTEEVVKSLARLINKPIKLISYA
GLKDKQALTTQWLSVHAPGEIIDGIETLEAPGWRILECTRHNKKLKPGFLSGNHFIITLRNVSDESDLVHRIEQIKFKGV
PNYFGEQRFGRDGGNLIKAEEILVQGRKVKDRFLKGMYFSAARSWLYNLILSRRVKESSWNLPLLGDVIQLVGSNSIFVN
DKSMDEQLLQRIGDKDVSPASPLPGRSKNLVKGTALQIINDVYEEWSAWLDGLEKNGLEEAWRANILYAEQIEYRINQGT
VELSFVLPAGAYATVVLRELVQY
>Mature_343_residues
MKEILMYSLDWPRAYGIPNSTATFKLFPEDFQVNELFEGQFSGEGEHIVLKIEKRGLTTEEVVKSLARLINKPIKLISYA
GLKDKQALTTQWLSVHAPGEIIDGIETLEAPGWRILECTRHNKKLKPGFLSGNHFIITLRNVSDESDLVHRIEQIKFKGV
PNYFGEQRFGRDGGNLIKAEEILVQGRKVKDRFLKGMYFSAARSWLYNLILSRRVKESSWNLPLLGDVIQLVGSNSIFVN
DKSMDEQLLQRIGDKDVSPASPLPGRSKNLVKGTALQIINDVYEEWSAWLDGLEKNGLEEAWRANILYAEQIEYRINQGT
VELSFVLPAGAYATVVLRELVQY

Specific function: Responsible for synthesis of pseudouridine from uracil- 13 in transfer RNAs [H]

COG id: COG0585

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TRUD domain [H]

Homologues:

Organism=Escherichia coli, GI1789102, Length=328, Percent_Identity=37.8048780487805, Blast_Score=211, Evalue=4e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR001656
- InterPro:   IPR020119
- InterPro:   IPR011760 [H]

Pfam domain/function: PF01142 TruD [H]

EC number: NA

Molecular weight: Translated: 38970; Mature: 38970

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS50984 TRUD ; PS01268 UPF0024

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEILMYSLDWPRAYGIPNSTATFKLFPEDFQVNELFEGQFSGEGEHIVLKIEKRGLTTE
CCCEEEEECCCCEECCCCCCCEEEEECCCCCCHHHHHCCCCCCCCCEEEEEEECCCCCHH
EVVKSLARLINKPIKLISYAGLKDKQALTTQWLSVHAPGEIIDGIETLEAPGWRILECTR
HHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHEECCCHHHHHHHHHHCCCCCEEEEECC
HNKKLKPGFLSGNHFIITLRNVSDESDLVHRIEQIKFKGVPNYFGEQRFGRDGGNLIKAE
CCCCCCCCEECCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEHHH
EILVQGRKVKDRFLKGMYFSAARSWLYNLILSRRVKESSWNLPLLGDVIQLVGSNSIFVN
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEE
DKSMDEQLLQRIGDKDVSPASPLPGRSKNLVKGTALQIINDVYEEWSAWLDGLEKNGLEE
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
AWRANILYAEQIEYRINQGTVELSFVLPAGAYATVVLRELVQY
HHHCCCEEEEHHHEEECCCEEEEEEEECCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKEILMYSLDWPRAYGIPNSTATFKLFPEDFQVNELFEGQFSGEGEHIVLKIEKRGLTTE
CCCEEEEECCCCEECCCCCCCEEEEECCCCCCHHHHHCCCCCCCCCEEEEEEECCCCCHH
EVVKSLARLINKPIKLISYAGLKDKQALTTQWLSVHAPGEIIDGIETLEAPGWRILECTR
HHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHEECCCHHHHHHHHHHCCCCCEEEEECC
HNKKLKPGFLSGNHFIITLRNVSDESDLVHRIEQIKFKGVPNYFGEQRFGRDGGNLIKAE
CCCCCCCCEECCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEHHH
EILVQGRKVKDRFLKGMYFSAARSWLYNLILSRRVKESSWNLPLLGDVIQLVGSNSIFVN
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEE
DKSMDEQLLQRIGDKDVSPASPLPGRSKNLVKGTALQIINDVYEEWSAWLDGLEKNGLEE
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
AWRANILYAEQIEYRINQGTVELSFVLPAGAYATVVLRELVQY
HHHCCCEEEEHHHEEECCCEEEEEEEECCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA