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The map label for this gene is ydgR

Identifier: 52841763

GI number: 52841763

Start: 1697717

End: 1699333

Strand: Reverse

Name: ydgR

Synonym: lpg1533

Alternate gene names: 52841763

Gene position: 1699333-1697717 (Counterclockwise)

Preceding gene: 52841764

Following gene: 52841762

Centisome position: 50.01

GC content: 36.8

Gene sequence:

>1617_bases
TTGCTGACGAAAGGTGGTTTTTCTCTGATTTGTCCACAAGGGTTAGTGTTAATATTCAAGAAGAGCTCAACTAGCAAGGG
AAAGCATATAATGTTGATTTTGAGTAAAAGAAGAGGACTATGGAGTTCCATGCCCCAAGGTACATTTGCATTATTTTTTA
TACAAGTTGTTTCCACTTTAAGCTTTAGTGTTCTTTATTCAACTCTTGTATTGTACATGAAAGGTAAACTTGGTTTACCC
ATAGCCACAGCAAACAGCATCATGGGGGTATTTATAGCCTACAATTTTGCGCTGCATCTCTTAGGTGGTTTTTGGGGTGG
CAGACTGCTCTCTAATCGCTCCTTATTTTGTGTTGGGATGATCGCGCAAATTGTAGGATGTGTTTTGCTCTCTATAGGAA
ATACAACTTTTTTATATTATGGCTTGGCTGCATTCTTAACAGGTTCAGGGTTAAATGTAACATGTGTAAATTGTATGCTG
ACTCAGCAATTTGCACCTGAAGACTCCCGAAGAGAAACCGCATTTCTCTGGAATTATGCGGGAATGAATATTGGCTTTTT
TATTGGATTTAGCCTCAGTGGGGCGTTCCAGATTTCTCAAAACTATCAAAGGCTTTTTCTTTTAAGCAGTTTAGGTAATC
TTGTTGCTTTGCTTATATGCCTTTATTTCTGGCAACAATTACATGATAAAAACACTACTTACTCAAGAAAGGACAAACCT
GCACAAAGAAAAGCAACAGCATTTGGGATTGGGCTAATTTTTGTACTTCCATTTATTTTAAGACAATTATTGCAGTATGC
TGATTGGGCCAATAAATTGGTTATTGTCACTGGAATTATTATGCTCATATTAATCTTGATATTAGCCCAACAACAATCTA
CAAAAGAAGCAAGAGACAAGATTTATGGATTTGCAGTATTAATGTTGGTTGGTACTGTATTTTGGATGTTATATCAAATT
GGCCCAATGGGGTTAACCGTATTCATTGACCATAATGTGCAACGACAATATGGTAATTGGATTATTCCGCCACAGTGGTT
TCAAAATATTAATACTGTAGTCATAGTATTCGGAGGGCCACTATTGGGTTTCATCTTAAATAGAATGCGTCAAAATGGAT
CTCAGATAAATATTCCTACTCAATTTGCTTTCGCATTATTTTTTATAGGGGTTGCTTTTGCTATCTTACCAATAGGTATC
AATTATGCTAATCAGCATGGTATGGTTAATCCGGGTTGGGTAGTAATAAGCTTTATATTACAAAGTATTGGCGAACTTCT
AATATCTCCAATTGGCTATGCGATGATAGGAGCGTTGGCCCCAACCTCACTCCAGGGTGTCATGATGGGAATGTGGATGC
TGAATACTGGAGTTGGTGCTACTCTATCCAGTTATAGCTCAAACTTAATGATTATTGGTCAAGAAAGTACTTCTCCTTTA
TTAACCAATGAGGGTTACAGTCATGTCTTTTTGATGCTTGGTTTGTTTGCAATAGGATCATCCGTTATCCTTTTCATTTT
AGTGCCTAAACTAAGAAAACTGATCAAAGAAAAAAACTTGAATGGCTTTAAACAGTCTGGCTTAGAGGTAACTGAAAGAG
TAGCTTTATGTGAGTAG

Upstream 100 bases:

>100_bases
GATTTGCGCAGAATAAGTAAAAAGTTTCTAATTGGACCTAATAACACAACTGCAGTTTGATTATTAAAATATATTTAATT
CATTTTAGATACTTTTTCAC

Downstream 100 bases:

>100_bases
TCCCTTTGTCCCAATTATAACGGCAGATATTGATTGGCGTGATGATCTGCCGTATTCCTTACAATTTGATGATATTTACT
ATTCTGCTGAAGGTGGAATT

Product: POT family peptide transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 538; Mature: 538

Protein sequence:

>538_residues
MLTKGGFSLICPQGLVLIFKKSSTSKGKHIMLILSKRRGLWSSMPQGTFALFFIQVVSTLSFSVLYSTLVLYMKGKLGLP
IATANSIMGVFIAYNFALHLLGGFWGGRLLSNRSLFCVGMIAQIVGCVLLSIGNTTFLYYGLAAFLTGSGLNVTCVNCML
TQQFAPEDSRRETAFLWNYAGMNIGFFIGFSLSGAFQISQNYQRLFLLSSLGNLVALLICLYFWQQLHDKNTTYSRKDKP
AQRKATAFGIGLIFVLPFILRQLLQYADWANKLVIVTGIIMLILILILAQQQSTKEARDKIYGFAVLMLVGTVFWMLYQI
GPMGLTVFIDHNVQRQYGNWIIPPQWFQNINTVVIVFGGPLLGFILNRMRQNGSQINIPTQFAFALFFIGVAFAILPIGI
NYANQHGMVNPGWVVISFILQSIGELLISPIGYAMIGALAPTSLQGVMMGMWMLNTGVGATLSSYSSNLMIIGQESTSPL
LTNEGYSHVFLMLGLFAIGSSVILFILVPKLRKLIKEKNLNGFKQSGLEVTERVALCE

Sequences:

>Translated_538_residues
MLTKGGFSLICPQGLVLIFKKSSTSKGKHIMLILSKRRGLWSSMPQGTFALFFIQVVSTLSFSVLYSTLVLYMKGKLGLP
IATANSIMGVFIAYNFALHLLGGFWGGRLLSNRSLFCVGMIAQIVGCVLLSIGNTTFLYYGLAAFLTGSGLNVTCVNCML
TQQFAPEDSRRETAFLWNYAGMNIGFFIGFSLSGAFQISQNYQRLFLLSSLGNLVALLICLYFWQQLHDKNTTYSRKDKP
AQRKATAFGIGLIFVLPFILRQLLQYADWANKLVIVTGIIMLILILILAQQQSTKEARDKIYGFAVLMLVGTVFWMLYQI
GPMGLTVFIDHNVQRQYGNWIIPPQWFQNINTVVIVFGGPLLGFILNRMRQNGSQINIPTQFAFALFFIGVAFAILPIGI
NYANQHGMVNPGWVVISFILQSIGELLISPIGYAMIGALAPTSLQGVMMGMWMLNTGVGATLSSYSSNLMIIGQESTSPL
LTNEGYSHVFLMLGLFAIGSSVILFILVPKLRKLIKEKNLNGFKQSGLEVTERVALCE
>Mature_538_residues
MLTKGGFSLICPQGLVLIFKKSSTSKGKHIMLILSKRRGLWSSMPQGTFALFFIQVVSTLSFSVLYSTLVLYMKGKLGLP
IATANSIMGVFIAYNFALHLLGGFWGGRLLSNRSLFCVGMIAQIVGCVLLSIGNTTFLYYGLAAFLTGSGLNVTCVNCML
TQQFAPEDSRRETAFLWNYAGMNIGFFIGFSLSGAFQISQNYQRLFLLSSLGNLVALLICLYFWQQLHDKNTTYSRKDKP
AQRKATAFGIGLIFVLPFILRQLLQYADWANKLVIVTGIIMLILILILAQQQSTKEARDKIYGFAVLMLVGTVFWMLYQI
GPMGLTVFIDHNVQRQYGNWIIPPQWFQNINTVVIVFGGPLLGFILNRMRQNGSQINIPTQFAFALFFIGVAFAILPIGI
NYANQHGMVNPGWVVISFILQSIGELLISPIGYAMIGALAPTSLQGVMMGMWMLNTGVGATLSSYSSNLMIIGQESTSPL
LTNEGYSHVFLMLGLFAIGSSVILFILVPKLRKLIKEKNLNGFKQSGLEVTERVALCE

Specific function: Proton-dependent permease that transports di- and tripeptides [H]

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTR2/POT transporter (TC 2.A.17) family. DtpA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789911, Length=479, Percent_Identity=26.9311064718163, Blast_Score=176, Evalue=3e-45,
Organism=Escherichia coli, GI1787922, Length=477, Percent_Identity=27.6729559748428, Blast_Score=175, Evalue=6e-45,
Organism=Escherichia coli, GI1790572, Length=496, Percent_Identity=26.6129032258064, Blast_Score=148, Evalue=9e-37,
Organism=Escherichia coli, GI1786927, Length=425, Percent_Identity=24.2352941176471, Blast_Score=130, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR000109
- InterPro:   IPR005279
- InterPro:   IPR018456 [H]

Pfam domain/function: PF00854 PTR2 [H]

EC number: NA

Molecular weight: Translated: 59481; Mature: 59481

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS00589 PTS_HPR_SER ; PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTKGGFSLICPQGLVLIFKKSSTSKGKHIMLILSKRRGLWSSMPQGTFALFFIQVVSTL
CCCCCCCEEECCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
SFSVLYSTLVLYMKGKLGLPIATANSIMGVFIAYNFALHLLGGFWGGRLLSNRSLFCVGM
HHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHH
IAQIVGCVLLSIGNTTFLYYGLAAFLTGSGLNVTCVNCMLTQQFAPEDSRRETAFLWNYA
HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHCCCCCCCCCEEEEEEEC
GMNIGFFIGFSLSGAFQISQNYQRLFLLSSLGNLVALLICLYFWQQLHDKNTTYSRKDKP
CCCEEEEEEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
AQRKATAFGIGLIFVLPFILRQLLQYADWANKLVIVTGIIMLILILILAQQQSTKEARDK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
IYGFAVLMLVGTVFWMLYQIGPMGLTVFIDHNVQRQYGNWIIPPQWFQNINTVVIVFGGP
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCCCCHHHHCCCCEEEEEECCH
LLGFILNRMRQNGSQINIPTQFAFALFFIGVAFAILPIGINYANQHGMVNPGWVVISFIL
HHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
QSIGELLISPIGYAMIGALAPTSLQGVMMGMWMLNTGVGATLSSYSSNLMIIGQESTSPL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEECCCCCCC
LTNEGYSHVFLMLGLFAIGSSVILFILVPKLRKLIKEKNLNGFKQSGLEVTERVALCE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHCCC
>Mature Secondary Structure
MLTKGGFSLICPQGLVLIFKKSSTSKGKHIMLILSKRRGLWSSMPQGTFALFFIQVVSTL
CCCCCCCEEECCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
SFSVLYSTLVLYMKGKLGLPIATANSIMGVFIAYNFALHLLGGFWGGRLLSNRSLFCVGM
HHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHH
IAQIVGCVLLSIGNTTFLYYGLAAFLTGSGLNVTCVNCMLTQQFAPEDSRRETAFLWNYA
HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHCCCCCCCCCEEEEEEEC
GMNIGFFIGFSLSGAFQISQNYQRLFLLSSLGNLVALLICLYFWQQLHDKNTTYSRKDKP
CCCEEEEEEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
AQRKATAFGIGLIFVLPFILRQLLQYADWANKLVIVTGIIMLILILILAQQQSTKEARDK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
IYGFAVLMLVGTVFWMLYQIGPMGLTVFIDHNVQRQYGNWIIPPQWFQNINTVVIVFGGP
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCCCCHHHHCCCCEEEEEECCH
LLGFILNRMRQNGSQINIPTQFAFALFFIGVAFAILPIGINYANQHGMVNPGWVVISFIL
HHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
QSIGELLISPIGYAMIGALAPTSLQGVMMGMWMLNTGVGATLSSYSSNLMIIGQESTSPL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEECCCCCCC
LTNEGYSHVFLMLGLFAIGSSVILFILVPKLRKLIKEKNLNGFKQSGLEVTERVALCE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]