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The map label for this gene is yddE [C]

Identifier: 52841761

GI number: 52841761

Start: 1694853

End: 1695644

Strand: Reverse

Name: yddE [C]

Synonym: lpg1531

Alternate gene names: 52841761

Gene position: 1695644-1694853 (Counterclockwise)

Preceding gene: 52841762

Following gene: 52841760

Centisome position: 49.9

GC content: 37.37

Gene sequence:

>792_bases
CTGATTGTGCAGAATATTGAGTTTTATCAAATAGATGCTTTTACGGACAAAGTCTTCCATGGTAATCCGGCTGCGGTTTG
TATTCTCGATGATTGGTTAAATGATGAGCTATTAAAAGCCATTGCTGCGCAAAATAATTTGGCAGAAACCGCTTTTATTA
TAAAAGATGATCAAGATTTTCATATTCGCTGGTTTACTCCTAATGGGGAAATTAATCTATCAGGACATGCAACTTTGGCA
GCAGGGTTTGCTTTACTTGAGTCAAATAAAGGACCTAGTAATTCTATTGTTTTTCACCACTCCAGTGGACAGATTTCGGT
AGAAAAGAGAAAGGAAAAGTTTGTTCTGAATTTTCCAAGAATAGGTTATAAGAAAACTCTTTCACCAGACCCAATTGTAT
CACTATTGGATCAACCTGCTATAGAAGTATTTGAAACAGACCTTGATTATCTAGTTTTACTTGAACATGAGTCACAGATT
CGAAATTTACAAATCGATTTATTTGCTTTAGCAAAACTCCCCAAAAGAGGAATCATTGTGACCTCAACAACAACAGAAGC
CGATTTCTATTCCCGATGTTTTTATCCAAAACACAGCATTGCAGAAGATCCTGTTACCGGCTCAGCACATTGCATATTAG
CTCCTTTTTGGGCAGAAAAACTCAATAAGAACAGCCTATATGCTATCCAGGGATTACACAGAAAAGGGGAGTTATATTGT
GAGCTCGAGAGGAATAGGGTATTGATTTCCGGCCATTGTCGATGGTATCTACGCGGGCATTTAGTAATTTAA

Upstream 100 bases:

>100_bases
AAAATTATACAGGGACCATAAGAGATATATTGAAGATATATTGATAATTCGACTTAACTTCATCTTTCTTTATCAGTTAT
AATTTTAATTTTTATGTGAG

Downstream 100 bases:

>100_bases
TAAAATCGATTGAGATGCATTCATCATTGAAGCATAATATAAAACCCATTTAGGAGCCAATGGAGCATGCCATTCCAAAA
GGAATTCTCTTCAGGAGAAT

Product: phenazine biosynthesis PhzF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MIVQNIEFYQIDAFTDKVFHGNPAAVCILDDWLNDELLKAIAAQNNLAETAFIIKDDQDFHIRWFTPNGEINLSGHATLA
AGFALLESNKGPSNSIVFHHSSGQISVEKRKEKFVLNFPRIGYKKTLSPDPIVSLLDQPAIEVFETDLDYLVLLEHESQI
RNLQIDLFALAKLPKRGIIVTSTTTEADFYSRCFYPKHSIAEDPVTGSAHCILAPFWAEKLNKNSLYAIQGLHRKGELYC
ELERNRVLISGHCRWYLRGHLVI

Sequences:

>Translated_263_residues
MIVQNIEFYQIDAFTDKVFHGNPAAVCILDDWLNDELLKAIAAQNNLAETAFIIKDDQDFHIRWFTPNGEINLSGHATLA
AGFALLESNKGPSNSIVFHHSSGQISVEKRKEKFVLNFPRIGYKKTLSPDPIVSLLDQPAIEVFETDLDYLVLLEHESQI
RNLQIDLFALAKLPKRGIIVTSTTTEADFYSRCFYPKHSIAEDPVTGSAHCILAPFWAEKLNKNSLYAIQGLHRKGELYC
ELERNRVLISGHCRWYLRGHLVI
>Mature_263_residues
MIVQNIEFYQIDAFTDKVFHGNPAAVCILDDWLNDELLKAIAAQNNLAETAFIIKDDQDFHIRWFTPNGEINLSGHATLA
AGFALLESNKGPSNSIVFHHSSGQISVEKRKEKFVLNFPRIGYKKTLSPDPIVSLLDQPAIEVFETDLDYLVLLEHESQI
RNLQIDLFALAKLPKRGIIVTSTTTEADFYSRCFYPKHSIAEDPVTGSAHCILAPFWAEKLNKNSLYAIQGLHRKGELYC
ELERNRVLISGHCRWYLRGHLVI

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=288, Percent_Identity=33.6805555555556, Blast_Score=140, Evalue=1e-33,
Organism=Homo sapiens, GI74316009, Length=259, Percent_Identity=32.046332046332, Blast_Score=125, Evalue=5e-29,
Organism=Escherichia coli, GI1787737, Length=247, Percent_Identity=27.9352226720648, Blast_Score=79, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17542160, Length=311, Percent_Identity=31.5112540192926, Blast_Score=134, Evalue=6e-32,
Organism=Caenorhabditis elegans, GI17542154, Length=311, Percent_Identity=31.5112540192926, Blast_Score=134, Evalue=6e-32,
Organism=Caenorhabditis elegans, GI17542158, Length=308, Percent_Identity=30.5194805194805, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17542152, Length=308, Percent_Identity=30.5194805194805, Blast_Score=110, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6321818, Length=285, Percent_Identity=28.0701754385965, Blast_Score=82, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 29838; Mature: 29838

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVQNIEFYQIDAFTDKVFHGNPAAVCILDDWLNDELLKAIAAQNNLAETAFIIKDDQDF
CEEECEEEEEEEEEECEEECCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEEEEECCCCE
HIRWFTPNGEINLSGHATLAAGFALLESNKGPSNSIVFHHSSGQISVEKRKEKFVLNFPR
EEEEECCCCEEEECCCHHHHHEEEEEECCCCCCCCEEEEECCCEEEEEECCCEEEEECCC
IGYKKTLSPDPIVSLLDQPAIEVFETDLDYLVLLEHESQIRNLQIDLFALAKLPKRGIIV
CCCCCCCCCCHHHHHHCCCCCEEECCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCEEE
TSTTTEADFYSRCFYPKHSIAEDPVTGSAHCILAPFWAEKLNKNSLYAIQGLHRKGELYC
EECCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCEEEEEECCCCCCEEE
ELERNRVLISGHCRWYLRGHLVI
EEECCEEEEECCEEEEEEEEEEC
>Mature Secondary Structure
MIVQNIEFYQIDAFTDKVFHGNPAAVCILDDWLNDELLKAIAAQNNLAETAFIIKDDQDF
CEEECEEEEEEEEEECEEECCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEEEEECCCCE
HIRWFTPNGEINLSGHATLAAGFALLESNKGPSNSIVFHHSSGQISVEKRKEKFVLNFPR
EEEEECCCCEEEECCCHHHHHEEEEEECCCCCCCCEEEEECCCEEEEEECCCEEEEECCC
IGYKKTLSPDPIVSLLDQPAIEVFETDLDYLVLLEHESQIRNLQIDLFALAKLPKRGIIV
CCCCCCCCCCHHHHHHCCCCCEEECCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCEEE
TSTTTEADFYSRCFYPKHSIAEDPVTGSAHCILAPFWAEKLNKNSLYAIQGLHRKGELYC
EECCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCEEEEEECCCCCCEEE
ELERNRVLISGHCRWYLRGHLVI
EEECCEEEEECCEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]