Click here to switch to the map view.

The map label for this gene is yafK [H]

Identifier: 52841744

GI number: 52841744

Start: 1675884

End: 1676615

Strand: Direct

Name: yafK [H]

Synonym: lpg1514

Alternate gene names: 52841744

Gene position: 1675884-1676615 (Clockwise)

Preceding gene: 52841743

Following gene: 52841745

Centisome position: 49.32

GC content: 37.02

Gene sequence:

>732_bases
ATGTGTGTAACTTACCAGTATAGTGCGTCTATGAAACGATTTTTTCCGATATTGTTTATTCTTTACTGCTGTAATTTATT
TGCAATGGCACCTAAGCTTAACTGGGATAAAGCGATTGACAAAGCAATAAAACGTTATGGACTAAGAGTAGAACCGCAAT
TAATTTCTTATTTTTCTAAAGCTGGGGTTAGCTACCCTCCTAAAGAAATTGCCTTGCTTGCCTTCAAGTCAGAGCGTAAA
GTCGAGTTATGGGCAAAAAATCCAAACCAGGAATGGACCCATATTCATGATTACCCATTAACTGGCTTTAGCGGGCGTTT
AGGACCCAAATTACGTGAGAATGATAAGCAGATCCCCGAAGGGATCTATAAATTAGTAAATTTTAATCCTTTTAGCAGCA
TGCACTTATCCATGATGATTAACTACCCAAATAGTTTCGATCGGCAAAAAGGTTATATGGACGGTAGGAAAGAGTTAGGA
AATAATATTTTTATTCATGGAAAAAATTTATCTGTAGGATGTTTGGCTGTCGGTGACCTTGCCATTGATCAACTGTTTAT
CTTGGCAAGAAGAGTTGGCCTCAAAAATATTCAGGTTATTATTGCCCCTAATGACTTACGATATCAAAAGCCATCAACAT
CTACATTTGCCCAACCCAGATGGTTGCCCGAGCTTTATAAGCAAATAACAGAATCACTCAAACCCTTTAAAAAGACTAAA
TTTACTGCTTAA

Upstream 100 bases:

>100_bases
ACCAAGCAAAAAGCAAATGCTCTTATTGCAACAAAAAAGGAGTTAAATTAGCGATTTTCTATATTTTAACAAATTGTTCT
GATATTTATTATTTGATAGT

Downstream 100 bases:

>100_bases
TATAAAGATTAGTCTTTTTATTATTTTATTTAAGTAATTTGAGTATATACTTAAATAAAATAAATAATATAAAGAATAAT
CATAAAAATCATATGAATAC

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MCVTYQYSASMKRFFPILFILYCCNLFAMAPKLNWDKAIDKAIKRYGLRVEPQLISYFSKAGVSYPPKEIALLAFKSERK
VELWAKNPNQEWTHIHDYPLTGFSGRLGPKLRENDKQIPEGIYKLVNFNPFSSMHLSMMINYPNSFDRQKGYMDGRKELG
NNIFIHGKNLSVGCLAVGDLAIDQLFILARRVGLKNIQVIIAPNDLRYQKPSTSTFAQPRWLPELYKQITESLKPFKKTK
FTA

Sequences:

>Translated_243_residues
MCVTYQYSASMKRFFPILFILYCCNLFAMAPKLNWDKAIDKAIKRYGLRVEPQLISYFSKAGVSYPPKEIALLAFKSERK
VELWAKNPNQEWTHIHDYPLTGFSGRLGPKLRENDKQIPEGIYKLVNFNPFSSMHLSMMINYPNSFDRQKGYMDGRKELG
NNIFIHGKNLSVGCLAVGDLAIDQLFILARRVGLKNIQVIIAPNDLRYQKPSTSTFAQPRWLPELYKQITESLKPFKKTK
FTA
>Mature_243_residues
MCVTYQYSASMKRFFPILFILYCCNLFAMAPKLNWDKAIDKAIKRYGLRVEPQLISYFSKAGVSYPPKEIALLAFKSERK
VELWAKNPNQEWTHIHDYPLTGFSGRLGPKLRENDKQIPEGIYKLVNFNPFSSMHLSMMINYPNSFDRQKGYMDGRKELG
NNIFIHGKNLSVGCLAVGDLAIDQLFILARRVGLKNIQVIIAPNDLRYQKPSTSTFAQPRWLPELYKQITESLKPFKKTK
FTA

Specific function: Unknown

COG id: COG3034

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1786418, Length=134, Percent_Identity=33.5820895522388, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 28071; Mature: 28071

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCVTYQYSASMKRFFPILFILYCCNLFAMAPKLNWDKAIDKAIKRYGLRVEPQLISYFSK
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
AGVSYPPKEIALLAFKSERKVELWAKNPNQEWTHIHDYPLTGFSGRLGPKLRENDKQIPE
CCCCCCHHHEEEEEECCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHH
GIYKLVNFNPFSSMHLSMMINYPNSFDRQKGYMDGRKELGNNIFIHGKNLSVGCLAVGDL
HHHHHHCCCCCCCEEEEEEEECCCCCHHHCCCCCHHHHHCCEEEEECCCCEEEEEEECHH
AIDQLFILARRVGLKNIQVIIAPNDLRYQKPSTSTFAQPRWLPELYKQITESLKPFKKTK
HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
FTA
CCC
>Mature Secondary Structure
MCVTYQYSASMKRFFPILFILYCCNLFAMAPKLNWDKAIDKAIKRYGLRVEPQLISYFSK
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
AGVSYPPKEIALLAFKSERKVELWAKNPNQEWTHIHDYPLTGFSGRLGPKLRENDKQIPE
CCCCCCHHHEEEEEECCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHH
GIYKLVNFNPFSSMHLSMMINYPNSFDRQKGYMDGRKELGNNIFIHGKNLSVGCLAVGDL
HHHHHHCCCCCCCEEEEEEEECCCCCHHHCCCCCHHHHHCCEEEEECCCCEEEEEEECHH
AIDQLFILARRVGLKNIQVIIAPNDLRYQKPSTSTFAQPRWLPELYKQITESLKPFKKTK
HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
FTA
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]