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The map label for this gene is yciR [C]

Identifier: 52841587

GI number: 52841587

Start: 1502289

End: 1504667

Strand: Reverse

Name: yciR [C]

Synonym: lpg1357

Alternate gene names: 52841587

Gene position: 1504667-1502289 (Counterclockwise)

Preceding gene: 52841588

Following gene: 52841585

Centisome position: 44.28

GC content: 34.93

Gene sequence:

>2379_bases
ATGATTAATATTATTAAAAACAGAAACAAGAAAAACCATACTGCTTCCACTGAGTTGAAATCAAAAATTAAGAAGGAGCA
GGTCAAACTGCTTTTTGATCAAGTTGGTATGGCTATATCAGGTGAAGCTTTAACAGTAACTATACTACCTATTGCATTAT
GGTCTGTTACAAATCATGAGCTGCTTATTATTTGGATGATTTTTACTTATGTTTTTTCAGATCTTTATAAAAGCATGCTG
CTCTTCTATTACAATAAACAACCAACATTATTTTCAACCGAAAAATGGTTGTTCCTTTTTAACTTGGGTGTTGTAAGTTC
TGGCTTGGCATGGGGATTTGCCAGTTCAATTATGATTCCAGCCTCAAGTACATTGCATCAAATCTTTGTCGTTTTTCTTA
TTACAGGAGTTACAGCAGCAGCCAATTCGCTCTATTCACCTGTGCGATTATCCTATTTTTTATTTCTGGTCACTGCTTTT
GTTCCTTTCACTATATGGTTATTTTCAAAAGGACAAGTTTATTTATTGTTGGGGTTTTGCGGCATTATTTATTTGGGGAT
TATGTTGTTTATTTCATATTACTCAAACAGGATTTTGATTAATACCTTAAAAATGCGCTTTAAAATCTCTAATTTGAATT
CAACCAAAGATATTTTAGAAAAAAAAGTAGCGGACAGAACCAAAGAATTGGAAAAAATCTTGGCTTTAACCAAATCAACT
TTAGAGTCAACAGCGGATGGTATTTTAGTTGTTGATCTCAAAGGTAATATTGAATTCTGCAATCAGCAATTTCTCAAGAT
GTGGGGAATTGCTCCAGGGTTTATTGACAGTCATAATGACACAGAAACAATTCAATATGTATTGAATCAGCTTAAAAATC
CGGAAGAATTTTTAAAACAAATTAAAGAACTATACAATAATCCAAAGCAGGAAAGCTTTGATGAATTGCATTTCAAAGAC
GGTAAAATCTTTGAGAGATACTCACAACCACATTGGTTAGACAATAAAATTATAGGGCGTGTTTGGAGTTTTAGAGATGA
GACATTAAGAACCAGATTAGCTTATCAAGCCAATCATGATTCTCTAACTGGTTTACCCAATCGTACAGCTCTATACGATC
GCCTGGATCACGCGATTAATTACTGTAAACGATTAAACACCTCATTATCGGTATTATTTCTGGATATTGATAATTTTAAG
TTAATTAATGACAGCCTGGGCCATGATGCCGGTGATATATTATTGTATGAATTTTCCAGGCGTCTTAAAGGATGCATACG
TCATAGCGATACAGTTGCTCGATTTGGCGGTGATGAGTTTGTTTTGTTATTGATGACCACTGAACCTAAAGATGTTATTC
TAATAGCGCAAAACATTTTAAAAGCTGTAGCGCAACCTATCAAATTGCCTACCCAGGAAGTCATAGTGACGACAAGTATA
GGAATTAGCCTTTTCCCTAAAGATGGCATTGATGCAAGCACCTTACTCAAAAATTCCGATACCGCAATGTACCTGGCTAA
AAAGGAAGGGCGCAATAATTTCCAATTTTATAATAATTCGATCAATCAACAATCGCTCAAACGCCTTGAGATACAAACAC
AGATACACAATGCAATTAAAAATAATGAATTTTTTATTCTTTACCAGCCCATTTATAATTTACGTAGCGGTGAATTAGTA
GGTGCCGAAGCCCTGATACGTTGGGGGCATCCTGCAATAGGACTCCTCTCTCCGGATGAATTTATTCCTATTGCTGAAGA
AACCGGGTTGATTAACCAAGTTGGCGAGTGGGTGTTAAGAAATGCCTGTGTTCAAAATAAAACCTGGCAACTTATGGGGT
TACCGCATATTAGTATTTCCGTTAATGTCTCATGGAGACAGTTAAAAAATAGCAATTTTATCGAGATTGCAGAATCTGTA
TTAAAAGAATCCAGACTAGATCCTCAGTATTTGGAAATTGAATTCACCGAAAGTACTATGATACAAAAATCAACGCCCAT
TGATTCAACGTTAATAAAAATTTCCCAGTTGGGCATTAAAATGGCAATTGATGACTTTGGTACCGGTTACTCAAATTTAA
GTTATTTAAAGACTTTCCCCTTCGATAAACTTAAAATTGATCGTTCATTTATTCAAAACTGCACCACTAACCCAAATGAT
GCCTCCATAGTTGAAGCAATTATTGCCATGGCCCATAGCCTGGAACTCAAAGTATTGGCAGAAGGAGTTGACACGATTGA
TAAAGCGTTTTTTATGCATCAACATGGCTGTGATGAAGTACAAGGTTTCCTTTATGGCCTACCTGTTAAAGCTGATAAGT
TTGTGAAATTAATGCAAAAAACTAAAATCCGCCATTCAAAATTTATTAATAAAACATAA

Upstream 100 bases:

>100_bases
CACGATGCACTTAGTTTTATTTTCTAACTGTTTACGAGGAAAACCATCAACATTAATGCTCGCTTCGCTTTTTAACATAC
CCTTTTACTAACTACTTGTT

Downstream 100 bases:

>100_bases
GGTTGTTGTTTCTTTTAGTACTATAAAGAAAATACTACAGACTACTCATCAATTGAACTAGCTCATTTAAACCAGTATTT
TAAACACACAACAAATTATC

Product: inner membrane protein PLUS sensory box protein LssE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 792; Mature: 792

Protein sequence:

>792_residues
MINIIKNRNKKNHTASTELKSKIKKEQVKLLFDQVGMAISGEALTVTILPIALWSVTNHELLIIWMIFTYVFSDLYKSML
LFYYNKQPTLFSTEKWLFLFNLGVVSSGLAWGFASSIMIPASSTLHQIFVVFLITGVTAAANSLYSPVRLSYFLFLVTAF
VPFTIWLFSKGQVYLLLGFCGIIYLGIMLFISYYSNRILINTLKMRFKISNLNSTKDILEKKVADRTKELEKILALTKST
LESTADGILVVDLKGNIEFCNQQFLKMWGIAPGFIDSHNDTETIQYVLNQLKNPEEFLKQIKELYNNPKQESFDELHFKD
GKIFERYSQPHWLDNKIIGRVWSFRDETLRTRLAYQANHDSLTGLPNRTALYDRLDHAINYCKRLNTSLSVLFLDIDNFK
LINDSLGHDAGDILLYEFSRRLKGCIRHSDTVARFGGDEFVLLLMTTEPKDVILIAQNILKAVAQPIKLPTQEVIVTTSI
GISLFPKDGIDASTLLKNSDTAMYLAKKEGRNNFQFYNNSINQQSLKRLEIQTQIHNAIKNNEFFILYQPIYNLRSGELV
GAEALIRWGHPAIGLLSPDEFIPIAEETGLINQVGEWVLRNACVQNKTWQLMGLPHISISVNVSWRQLKNSNFIEIAESV
LKESRLDPQYLEIEFTESTMIQKSTPIDSTLIKISQLGIKMAIDDFGTGYSNLSYLKTFPFDKLKIDRSFIQNCTTNPND
ASIVEAIIAMAHSLELKVLAEGVDTIDKAFFMHQHGCDEVQGFLYGLPVKADKFVKLMQKTKIRHSKFINKT

Sequences:

>Translated_792_residues
MINIIKNRNKKNHTASTELKSKIKKEQVKLLFDQVGMAISGEALTVTILPIALWSVTNHELLIIWMIFTYVFSDLYKSML
LFYYNKQPTLFSTEKWLFLFNLGVVSSGLAWGFASSIMIPASSTLHQIFVVFLITGVTAAANSLYSPVRLSYFLFLVTAF
VPFTIWLFSKGQVYLLLGFCGIIYLGIMLFISYYSNRILINTLKMRFKISNLNSTKDILEKKVADRTKELEKILALTKST
LESTADGILVVDLKGNIEFCNQQFLKMWGIAPGFIDSHNDTETIQYVLNQLKNPEEFLKQIKELYNNPKQESFDELHFKD
GKIFERYSQPHWLDNKIIGRVWSFRDETLRTRLAYQANHDSLTGLPNRTALYDRLDHAINYCKRLNTSLSVLFLDIDNFK
LINDSLGHDAGDILLYEFSRRLKGCIRHSDTVARFGGDEFVLLLMTTEPKDVILIAQNILKAVAQPIKLPTQEVIVTTSI
GISLFPKDGIDASTLLKNSDTAMYLAKKEGRNNFQFYNNSINQQSLKRLEIQTQIHNAIKNNEFFILYQPIYNLRSGELV
GAEALIRWGHPAIGLLSPDEFIPIAEETGLINQVGEWVLRNACVQNKTWQLMGLPHISISVNVSWRQLKNSNFIEIAESV
LKESRLDPQYLEIEFTESTMIQKSTPIDSTLIKISQLGIKMAIDDFGTGYSNLSYLKTFPFDKLKIDRSFIQNCTTNPND
ASIVEAIIAMAHSLELKVLAEGVDTIDKAFFMHQHGCDEVQGFLYGLPVKADKFVKLMQKTKIRHSKFINKT
>Mature_792_residues
MINIIKNRNKKNHTASTELKSKIKKEQVKLLFDQVGMAISGEALTVTILPIALWSVTNHELLIIWMIFTYVFSDLYKSML
LFYYNKQPTLFSTEKWLFLFNLGVVSSGLAWGFASSIMIPASSTLHQIFVVFLITGVTAAANSLYSPVRLSYFLFLVTAF
VPFTIWLFSKGQVYLLLGFCGIIYLGIMLFISYYSNRILINTLKMRFKISNLNSTKDILEKKVADRTKELEKILALTKST
LESTADGILVVDLKGNIEFCNQQFLKMWGIAPGFIDSHNDTETIQYVLNQLKNPEEFLKQIKELYNNPKQESFDELHFKD
GKIFERYSQPHWLDNKIIGRVWSFRDETLRTRLAYQANHDSLTGLPNRTALYDRLDHAINYCKRLNTSLSVLFLDIDNFK
LINDSLGHDAGDILLYEFSRRLKGCIRHSDTVARFGGDEFVLLLMTTEPKDVILIAQNILKAVAQPIKLPTQEVIVTTSI
GISLFPKDGIDASTLLKNSDTAMYLAKKEGRNNFQFYNNSINQQSLKRLEIQTQIHNAIKNNEFFILYQPIYNLRSGELV
GAEALIRWGHPAIGLLSPDEFIPIAEETGLINQVGEWVLRNACVQNKTWQLMGLPHISISVNVSWRQLKNSNFIEIAESV
LKESRLDPQYLEIEFTESTMIQKSTPIDSTLIKISQLGIKMAIDDFGTGYSNLSYLKTFPFDKLKIDRSFIQNCTTNPND
ASIVEAIIAMAHSLELKVLAEGVDTIDKAFFMHQHGCDEVQGFLYGLPVKADKFVKLMQKTKIRHSKFINKT

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=429, Percent_Identity=38.6946386946387, Blast_Score=319, Evalue=4e-88,
Organism=Escherichia coli, GI87081921, Length=436, Percent_Identity=31.1926605504587, Blast_Score=238, Evalue=9e-64,
Organism=Escherichia coli, GI226510982, Length=500, Percent_Identity=29, Blast_Score=195, Evalue=8e-51,
Organism=Escherichia coli, GI1790496, Length=258, Percent_Identity=32.9457364341085, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1786507, Length=271, Percent_Identity=32.1033210332103, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI87081743, Length=258, Percent_Identity=32.9457364341085, Blast_Score=143, Evalue=5e-35,
Organism=Escherichia coli, GI87081980, Length=270, Percent_Identity=31.8518518518519, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI1788502, Length=262, Percent_Identity=31.6793893129771, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI87081845, Length=271, Percent_Identity=29.1512915129151, Blast_Score=126, Evalue=6e-30,
Organism=Escherichia coli, GI1787055, Length=254, Percent_Identity=32.2834645669291, Blast_Score=126, Evalue=7e-30,
Organism=Escherichia coli, GI1788849, Length=252, Percent_Identity=32.1428571428571, Blast_Score=119, Evalue=7e-28,
Organism=Escherichia coli, GI87082096, Length=439, Percent_Identity=25.9681093394077, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI1788381, Length=580, Percent_Identity=23.9655172413793, Blast_Score=109, Evalue=8e-25,
Organism=Escherichia coli, GI1786584, Length=167, Percent_Identity=34.1317365269461, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI87081977, Length=157, Percent_Identity=34.3949044585987, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI145693134, Length=170, Percent_Identity=33.5294117647059, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI1787816, Length=175, Percent_Identity=33.7142857142857, Blast_Score=96, Evalue=1e-20,
Organism=Escherichia coli, GI1787802, Length=173, Percent_Identity=34.6820809248555, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87081881, Length=167, Percent_Identity=37.7245508982036, Blast_Score=93, Evalue=8e-20,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=33.5329341317365, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI1788956, Length=175, Percent_Identity=35.4285714285714, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1787262, Length=159, Percent_Identity=30.188679245283, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1789650, Length=433, Percent_Identity=20.3233256351039, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1787410, Length=126, Percent_Identity=32.5396825396825, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI87081974, Length=149, Percent_Identity=30.8724832214765, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 90346; Mature: 90346

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINIIKNRNKKNHTASTELKSKIKKEQVKLLFDQVGMAISGEALTVTILPIALWSVTNHE
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCEEEEEEEEHHHHHCCCCC
LLIIWMIFTYVFSDLYKSMLLFYYNKQPTLFSTEKWLFLFNLGVVSSGLAWGFASSIMIP
HHHHHHHHHHHHHHHHHHHHHEEECCCCCEECCCCEEEEEEHHHHHCCHHHHHHCCEECC
ASSTLHQIFVVFLITGVTAAANSLYSPVRLSYFLFLVTAFVPFTIWLFSKGQVYLLLGFC
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECCCCEEEHHHHH
GIIYLGIMLFISYYSNRILINTLKMRFKISNLNSTKDILEKKVADRTKELEKILALTKST
HHHHHHHHHHHHHHCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LESTADGILVVDLKGNIEFCNQQFLKMWGIAPGFIDSHNDTETIQYVLNQLKNPEEFLKQ
HHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHH
IKELYNNPKQESFDELHFKDGKIFERYSQPHWLDNKIIGRVWSFRDETLRTRLAYQANHD
HHHHHCCCCCCCHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
SLTGLPNRTALYDRLDHAINYCKRLNTSLSVLFLDIDNFKLINDSLGHDAGDILLYEFSR
CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEECHHCCCCCCHHHHHHHHH
RLKGCIRHSDTVARFGGDEFVLLLMTTEPKDVILIAQNILKAVAQPIKLPTQEVIVTTSI
HHHHHHHCCCHHHHCCCCEEEEEEEECCCCCEEHHHHHHHHHHHHHCCCCCHHEEEEEEC
GISLFPKDGIDASTLLKNSDTAMYLAKKEGRNNFQFYNNSINQQSLKRLEIQTQIHNAIK
CEEECCCCCCCHHHHHCCCCCEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHC
NNEFFILYQPIYNLRSGELVGAEALIRWGHPAIGLLSPDEFIPIAEETGLINQVGEWVLR
CCCEEEEECCCCCCCCCCEECHHHHHHCCCCCEECCCCCCCCCCHHHCCHHHHHHHHHHH
NACVQNKTWQLMGLPHISISVNVSWRQLKNSNFIEIAESVLKESRLDPQYLEIEFTESTM
HHHHCCCCEEEEECCEEEEEEEEEHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHH
IQKSTPIDSTLIKISQLGIKMAIDDFGTGYSNLSYLKTFPFDKLKIDRSFIQNCTTNPND
HCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCCH
ASIVEAIIAMAHSLELKVLAEGVDTIDKAFFMHQHGCDEVQGFLYGLPVKADKFVKLMQK
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHH
TKIRHSKFINKT
HHHHHHHCCCCC
>Mature Secondary Structure
MINIIKNRNKKNHTASTELKSKIKKEQVKLLFDQVGMAISGEALTVTILPIALWSVTNHE
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCEEEEEEEEHHHHHCCCCC
LLIIWMIFTYVFSDLYKSMLLFYYNKQPTLFSTEKWLFLFNLGVVSSGLAWGFASSIMIP
HHHHHHHHHHHHHHHHHHHHHEEECCCCCEECCCCEEEEEEHHHHHCCHHHHHHCCEECC
ASSTLHQIFVVFLITGVTAAANSLYSPVRLSYFLFLVTAFVPFTIWLFSKGQVYLLLGFC
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECCCCEEEHHHHH
GIIYLGIMLFISYYSNRILINTLKMRFKISNLNSTKDILEKKVADRTKELEKILALTKST
HHHHHHHHHHHHHHCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LESTADGILVVDLKGNIEFCNQQFLKMWGIAPGFIDSHNDTETIQYVLNQLKNPEEFLKQ
HHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHH
IKELYNNPKQESFDELHFKDGKIFERYSQPHWLDNKIIGRVWSFRDETLRTRLAYQANHD
HHHHHCCCCCCCHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
SLTGLPNRTALYDRLDHAINYCKRLNTSLSVLFLDIDNFKLINDSLGHDAGDILLYEFSR
CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEECHHCCCCCCHHHHHHHHH
RLKGCIRHSDTVARFGGDEFVLLLMTTEPKDVILIAQNILKAVAQPIKLPTQEVIVTTSI
HHHHHHHCCCHHHHCCCCEEEEEEEECCCCCEEHHHHHHHHHHHHHCCCCCHHEEEEEEC
GISLFPKDGIDASTLLKNSDTAMYLAKKEGRNNFQFYNNSINQQSLKRLEIQTQIHNAIK
CEEECCCCCCCHHHHHCCCCCEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHC
NNEFFILYQPIYNLRSGELVGAEALIRWGHPAIGLLSPDEFIPIAEETGLINQVGEWVLR
CCCEEEEECCCCCCCCCCEECHHHHHHCCCCCEECCCCCCCCCCHHHCCHHHHHHHHHHH
NACVQNKTWQLMGLPHISISVNVSWRQLKNSNFIEIAESVLKESRLDPQYLEIEFTESTM
HHHHCCCCEEEEECCEEEEEEEEEHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHH
IQKSTPIDSTLIKISQLGIKMAIDDFGTGYSNLSYLKTFPFDKLKIDRSFIQNCTTNPND
HCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCCH
ASIVEAIIAMAHSLELKVLAEGVDTIDKAFFMHQHGCDEVQGFLYGLPVKADKFVKLMQK
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHH
TKIRHSKFINKT
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]