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The map label for this gene is dedE

Identifier: 52841574

GI number: 52841574

Start: 1482895

End: 1483428

Strand: Direct

Name: dedE

Synonym: lpg1344

Alternate gene names: 52841574

Gene position: 1482895-1483428 (Clockwise)

Preceding gene: 52841573

Following gene: 52841580

Centisome position: 43.64

GC content: 37.64

Gene sequence:

>534_bases
ATGCAACTACAATGGGTTGATATAGCAATTGTTGCAATTATCGCTTTGTCCGTATTGACCGGATTGTTTCGTGGTTTTGT
AAAGGAACTTGTTGCATTATGTGTGTGGGTATTAGCTATTTGGCTAGGTTTTAATTATTCACAAAGCCTGGATCCCTGGT
TAAGTTCTTATATCGAGGAACAGTCAGTACGAACAGCTATTGGATTTATTATTATTCTTTTTGCCACCCTTTTTGTTGGG
GGGGTAGTGAATGCAATACTCAGCTTTATCTTAAAACGAGCTGGTTTAAGCGGAACTGATCGAACTTTAGGAATGGGTTT
TGGCTTTTTACGTGGCGTTTTTATCGTTGCCCTGATTATGGTTGCTGTTAAAATGACCTCTTTGCCTTATCAGGAATATT
CACAAAAGTCCAAACTTTATGCACGATTCGATCCTGTTGTAGCTTTGCTATATAGCCATTTGCCTGAATTTATAAAGCAG
GTCAAGGCTGTTGATAAAACAGAAAATATTATTGATACAGTTCCTGCTTCTTAA

Upstream 100 bases:

>100_bases
GCCATTCACCCGTTAAAAAAGATGTAATAAAATTAAAAACTCAATTAGCTAGTGCCATGCAATTAAATGGTTTTGTTGTG
AATACTGGAGTTAGTTAGTT

Downstream 100 bases:

>100_bases
TGTAATCGTACACCAAATCAGGCAAATTATTCTTTACATCTTTATGTTGTTTTAATTGTTCTCTAATTTTTGTTGAGGAT
ATATCATAGTGTCCAGCATT

Product: colicin V

Products: NA

Alternate protein names: Protein dedE; Pur regulon 18 kDa protein [H]

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MQLQWVDIAIVAIIALSVLTGLFRGFVKELVALCVWVLAIWLGFNYSQSLDPWLSSYIEEQSVRTAIGFIIILFATLFVG
GVVNAILSFILKRAGLSGTDRTLGMGFGFLRGVFIVALIMVAVKMTSLPYQEYSQKSKLYARFDPVVALLYSHLPEFIKQ
VKAVDKTENIIDTVPAS

Sequences:

>Translated_177_residues
MQLQWVDIAIVAIIALSVLTGLFRGFVKELVALCVWVLAIWLGFNYSQSLDPWLSSYIEEQSVRTAIGFIIILFATLFVG
GVVNAILSFILKRAGLSGTDRTLGMGFGFLRGVFIVALIMVAVKMTSLPYQEYSQKSKLYARFDPVVALLYSHLPEFIKQ
VKAVDKTENIIDTVPAS
>Mature_177_residues
MQLQWVDIAIVAIIALSVLTGLFRGFVKELVALCVWVLAIWLGFNYSQSLDPWLSSYIEEQSVRTAIGFIIILFATLFVG
GVVNAILSFILKRAGLSGTDRTLGMGFGFLRGVFIVALIMVAVKMTSLPYQEYSQKSKLYARFDPVVALLYSHLPEFIKQ
VKAVDKTENIIDTVPAS

Specific function: Required for colicin V production from plasmid IncFI ColV3-K30 [H]

COG id: COG1286

COG function: function code R; Uncharacterized membrane protein, required for colicin V production

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788652, Length=153, Percent_Identity=37.9084967320261, Blast_Score=103, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003825 [H]

Pfam domain/function: PF02674 Colicin_V [H]

EC number: NA

Molecular weight: Translated: 19627; Mature: 19627

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLQWVDIAIVAIIALSVLTGLFRGFVKELVALCVWVLAIWLGFNYSQSLDPWLSSYIEE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
QSVRTAIGFIIILFATLFVGGVVNAILSFILKRAGLSGTDRTLGMGFGFLRGVFIVALIM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
VAVKMTSLPYQEYSQKSKLYARFDPVVALLYSHLPEFIKQVKAVDKTENIIDTVPAS
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQLQWVDIAIVAIIALSVLTGLFRGFVKELVALCVWVLAIWLGFNYSQSLDPWLSSYIEE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
QSVRTAIGFIIILFATLFVGGVVNAILSFILKRAGLSGTDRTLGMGFGFLRGVFIVALIM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
VAVKMTSLPYQEYSQKSKLYARFDPVVALLYSHLPEFIKQVKAVDKTENIIDTVPAS
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3040734; 2991286; 9205837; 9278503; 2542219 [H]