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The map label for this gene is ygjR [C]

Identifier: 52841552

GI number: 52841552

Start: 1454875

End: 1455975

Strand: Direct

Name: ygjR [C]

Synonym: lpg1321

Alternate gene names: 52841552

Gene position: 1454875-1455975 (Clockwise)

Preceding gene: 52841549

Following gene: 52841558

Centisome position: 42.82

GC content: 36.06

Gene sequence:

>1101_bases
CTGCTATGGTTTCACTCGTGTCATTTATGCGTTTTAATATACAGTCAGCAATTTTTTAGCCGGAAGGAATATATGGATAA
TGCGATAATAAAATGGGGAATTTTAGGTACAAGTTTTATCTCTGAAGTGATGGCTAATGCAATTCAGGAATCAAAAACCA
GTGAGCTTGTTGCTATTGGGAGTCGAACAAGCAAGATAGCCAAACGATTTTCTGAAAAATTCGCTATTCCAAAATTTTAT
GACAATTATCAATCATTAATTCTCGATAGTGATATAGATGTGGTTTATATAGGGTTACCTAATCATCTGCATAAAGAATG
GATTATTCGTTGTGCGCAGGCAGGAAAAAATATTTTGTGTGAAAAACCTTTTGTTGTTGGTATAGAAGAAATCCATGAGG
TTATTTCAGTAATTGAGAGAACAAATGTTTTTTGTATGGAAGCTCTAATGTACCGATATCATCCCTTTATAAAAAAATTA
CAAGAGATCATTCAAAGCAACACAATAGGTAAGATAAAGTTATATAATGCGACATATACAGCAAACATTGCAGAAATAGC
CAATCCTGTTGCGGGAGGAAGTATACGTAATCTCGGATGTTACCCAATTTCCTTAGTGAGGCTGCTTGCTAACGCAGAGC
CAATCGAAATCCGTGGTATTGGAAGAATGAATTCCAGGAATAACACGGATAGTCAAGCCAGCGTTCTTTTAAAATTTGAA
GACGATTCAATTGCAGCAGTTTCCACTGCCGATGATATTGAAATGCATTGGCAATTCGAGGTTTATGGAACAAAAGGCCA
TTTAAAAGTAGAAACGAATCCCTGGTTGCCTGGCTCTGAGGGTAACAAAATTTATATCTCTCTCAATACTCAATCAACAC
CCAGAGAAATAAGCGTGAAAGCAGAAAAGTCACTTTATACCTATCAAATAGATTTTATCAATGAGCAAGTATTGAAAGGG
GATTCCAGACAATTTAGCAAGACGTCTTTATTAGATAGCATGGGAAATACAATCGTTCTGGAAACCTGGCTAAAACAAAT
ACTCTCTTCAAAACCAAGCCTTGAATTATCCAGATTAAAAGACAGGCTGCCTCATGCATAA

Upstream 100 bases:

>100_bases
TTAAAAACCGTAAAATAATGGATAATGACATAATAACTAAATTTGACTGCTTACCATAGCTTTTTTAATAACTTAGAGCA
GGAAATTTAAGTGGTTTTTA

Downstream 100 bases:

>100_bases
GCAAAAAGGTTCTGGTGATACTAGTCAAATTTTCCGAGAAGAGAGTAATCTGTTTTTCCTTCGCGCCAGATACCATCCCA
ATTGACAGGTGGATTAACTG

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MLWFHSCHLCVLIYSQQFFSRKEYMDNAIIKWGILGTSFISEVMANAIQESKTSELVAIGSRTSKIAKRFSEKFAIPKFY
DNYQSLILDSDIDVVYIGLPNHLHKEWIIRCAQAGKNILCEKPFVVGIEEIHEVISVIERTNVFCMEALMYRYHPFIKKL
QEIIQSNTIGKIKLYNATYTANIAEIANPVAGGSIRNLGCYPISLVRLLANAEPIEIRGIGRMNSRNNTDSQASVLLKFE
DDSIAAVSTADDIEMHWQFEVYGTKGHLKVETNPWLPGSEGNKIYISLNTQSTPREISVKAEKSLYTYQIDFINEQVLKG
DSRQFSKTSLLDSMGNTIVLETWLKQILSSKPSLELSRLKDRLPHA

Sequences:

>Translated_366_residues
MLWFHSCHLCVLIYSQQFFSRKEYMDNAIIKWGILGTSFISEVMANAIQESKTSELVAIGSRTSKIAKRFSEKFAIPKFY
DNYQSLILDSDIDVVYIGLPNHLHKEWIIRCAQAGKNILCEKPFVVGIEEIHEVISVIERTNVFCMEALMYRYHPFIKKL
QEIIQSNTIGKIKLYNATYTANIAEIANPVAGGSIRNLGCYPISLVRLLANAEPIEIRGIGRMNSRNNTDSQASVLLKFE
DDSIAAVSTADDIEMHWQFEVYGTKGHLKVETNPWLPGSEGNKIYISLNTQSTPREISVKAEKSLYTYQIDFINEQVLKG
DSRQFSKTSLLDSMGNTIVLETWLKQILSSKPSLELSRLKDRLPHA
>Mature_366_residues
MLWFHSCHLCVLIYSQQFFSRKEYMDNAIIKWGILGTSFISEVMANAIQESKTSELVAIGSRTSKIAKRFSEKFAIPKFY
DNYQSLILDSDIDVVYIGLPNHLHKEWIIRCAQAGKNILCEKPFVVGIEEIHEVISVIERTNVFCMEALMYRYHPFIKKL
QEIIQSNTIGKIKLYNATYTANIAEIANPVAGGSIRNLGCYPISLVRLLANAEPIEIRGIGRMNSRNNTDSQASVLLKFE
DDSIAAVSTADDIEMHWQFEVYGTKGHLKVETNPWLPGSEGNKIYISLNTQSTPREISVKAEKSLYTYQIDFINEQVLKG
DSRQFSKTSLLDSMGNTIVLETWLKQILSSKPSLELSRLKDRLPHA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI7657212, Length=255, Percent_Identity=28.2352941176471, Blast_Score=129, Evalue=4e-30,
Organism=Escherichia coli, GI145693182, Length=229, Percent_Identity=24.4541484716157, Blast_Score=72, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24581115, Length=257, Percent_Identity=28.0155642023346, Blast_Score=115, Evalue=6e-26,
Organism=Drosophila melanogaster, GI24581117, Length=255, Percent_Identity=26.6666666666667, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24584727, Length=254, Percent_Identity=24.0157480314961, Blast_Score=83, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 41554; Mature: 41554

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLWFHSCHLCVLIYSQQFFSRKEYMDNAIIKWGILGTSFISEVMANAIQESKTSELVAIG
CCEEECHHEEEEHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEC
SRTSKIAKRFSEKFAIPKFYDNYQSLILDSDIDVVYIGLPNHLHKEWIIRCAQAGKNILC
CHHHHHHHHHHHHCCCCHHHHCHHHHEEECCCCEEEECCCCHHHHHHHHHHHHCCCCCEE
EKPFVVGIEEIHEVISVIERTNVFCMEALMYRYHPFIKKLQEIIQSNTIGKIKLYNATYT
CCCCEECHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECEEE
ANIAEIANPVAGGSIRNLGCYPISLVRLLANAEPIEIRGIGRMNSRNNTDSQASVLLKFE
CCHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEEEC
DDSIAAVSTADDIEMHWQFEVYGTKGHLKVETNPWLPGSEGNKIYISLNTQSTPREISVK
CCCEEEEECCCCCEEEEEEEEEECCCEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEE
AEKSLYTYQIDFINEQVLKGDSRQFSKTSLLDSMGNTIVLETWLKQILSSKPSLELSRLK
ECCCEEEEEEEEHHHHHHCCCCCHHHHHHHHHHHCCEEEHHHHHHHHHCCCCCCHHHHHH
DRLPHA
HHCCCC
>Mature Secondary Structure
MLWFHSCHLCVLIYSQQFFSRKEYMDNAIIKWGILGTSFISEVMANAIQESKTSELVAIG
CCEEECHHEEEEHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEC
SRTSKIAKRFSEKFAIPKFYDNYQSLILDSDIDVVYIGLPNHLHKEWIIRCAQAGKNILC
CHHHHHHHHHHHHCCCCHHHHCHHHHEEECCCCEEEECCCCHHHHHHHHHHHHCCCCCEE
EKPFVVGIEEIHEVISVIERTNVFCMEALMYRYHPFIKKLQEIIQSNTIGKIKLYNATYT
CCCCEECHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECEEE
ANIAEIANPVAGGSIRNLGCYPISLVRLLANAEPIEIRGIGRMNSRNNTDSQASVLLKFE
CCHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEEEC
DDSIAAVSTADDIEMHWQFEVYGTKGHLKVETNPWLPGSEGNKIYISLNTQSTPREISVK
CCCEEEEECCCCCEEEEEEEEEECCCEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEE
AEKSLYTYQIDFINEQVLKGDSRQFSKTSLLDSMGNTIVLETWLKQILSSKPSLELSRLK
ECCCEEEEEEEEHHHHHHCCCCCHHHHHHHHHHHCCEEEHHHHHHHHHCCCCCCHHHHHH
DRLPHA
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7845353 [H]