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The map label for this gene is yhiR [C]

Identifier: 52841527

GI number: 52841527

Start: 1423936

End: 1424799

Strand: Reverse

Name: yhiR [C]

Synonym: lpg1296

Alternate gene names: 52841527

Gene position: 1424799-1423936 (Counterclockwise)

Preceding gene: 52841528

Following gene: 52841526

Centisome position: 41.93

GC content: 34.38

Gene sequence:

>864_bases
TTGAAGCCCTCTTTCATGCTCAGTTATCAACATGGCTATCATGCCGGAAATTTTGCTGATGTCATCAAGCACATCACCCT
AACTCGACTATTGGCTTATCTAACCCACAAAGATAAACCCTTATTCTATCTTGAAACCCATTCAGGTCGAGGGATATATG
ATTTAAAAGACAAGCAGTCTTTAAAAACAGAAGAATATAAGGAAGGAATTAATCCAGTATGGCTCGATAGAGAGAATCTC
CCCTCTCTTTTTCTTGAATATATTAGTGTAATCAAGCAAATAAATCTTAATTCAACATTGAGTTATTATCCTGGTTCCCC
CTATTTCGCAATCAATCAACTGCGCTCTCAAGACCGATTATACTTATGTGAATTACACCCAACAGAATATAATTTCTTAT
TAAAACTTCCTCATTTTAATAAAAAAGTTTATGTTAACCACACGGATGGAGTTTCAAAATTAAATGCCCTTTTGCCGCCA
CCGGAAAAACGTGGGTTAATTTTTATTGATCCCTCATATGAAAGAAAAGAAGAATACAAAGAAATTCCATACGCTATAAA
AAATGCTTACTCAAAATTTTCTACCGGCTTATATTGTGTTTGGTATCCTGTTGTCAATAAAGCATGGACTGAACAATTCT
TGAGGAAAATGAGAGAAATTAGTTCCAAATCGGTAAGGATTGAGCTTCATTTGAATCCACTCATTAATGAAGGAATGACT
GGTTGTGGTCTTTGGATAATTAATCCTCCCTATACTTTCCCTTCAGAAATCAAGTTAGTTTTAGAGACATTAACAACTTA
TTTTAACCCTGGCTCATCTTCTTATATGATTGAATCAGGTTCAAAATTATGTCACGAGTTATAA

Upstream 100 bases:

>100_bases
TTACGATGCGGGAGTAAAATAAAAGAGACCGCTTATGCAAGAAGTCTAATATGCGGCTACAGCATAAACCATTATTTTGA
TATAATTTGGAAAATATCTT

Downstream 100 bases:

>100_bases
ATTATGACTATCCTGCCTATTTCGGCTTTTTCAGATAATTATATCTGGACCTTTATTGATAAAATAGCTGGGGTATTAGA
TTGTGTTGATCCAGGAGAAG

Product: protein involved in catabolism of external DNA

Products: NA

Alternate protein names: ORFJ [H]

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MKPSFMLSYQHGYHAGNFADVIKHITLTRLLAYLTHKDKPLFYLETHSGRGIYDLKDKQSLKTEEYKEGINPVWLDRENL
PSLFLEYISVIKQINLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPP
PEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISSKSVRIELHLNPLINEGMT
GCGLWIINPPYTFPSEIKLVLETLTTYFNPGSSSYMIESGSKLCHEL

Sequences:

>Translated_287_residues
MKPSFMLSYQHGYHAGNFADVIKHITLTRLLAYLTHKDKPLFYLETHSGRGIYDLKDKQSLKTEEYKEGINPVWLDRENL
PSLFLEYISVIKQINLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPP
PEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISSKSVRIELHLNPLINEGMT
GCGLWIINPPYTFPSEIKLVLETLTTYFNPGSSSYMIESGSKLCHEL
>Mature_287_residues
MKPSFMLSYQHGYHAGNFADVIKHITLTRLLAYLTHKDKPLFYLETHSGRGIYDLKDKQSLKTEEYKEGINPVWLDRENL
PSLFLEYISVIKQINLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPP
PEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISSKSVRIELHLNPLINEGMT
GCGLWIINPPYTFPSEIKLVLETLTTYFNPGSSSYMIESGSKLCHEL

Specific function: Unknown

COG id: COG2961

COG function: function code R; Protein involved in catabolism of external DNA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yhiR [H]

Homologues:

Organism=Escherichia coli, GI1789914, Length=279, Percent_Identity=39.7849462365591, Blast_Score=212, Evalue=2e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007473 [H]

Pfam domain/function: PF04378 DUF519 [H]

EC number: NA

Molecular weight: Translated: 33455; Mature: 33455

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPSFMLSYQHGYHAGNFADVIKHITLTRLLAYLTHKDKPLFYLETHSGRGIYDLKDKQS
CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEECCCCHH
LKTEEYKEGINPVWLDRENLPSLFLEYISVIKQINLNSTLSYYPGSPYFAINQLRSQDRL
CCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCCCCE
YLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYK
EEEEECCCCEEEEEECCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEECCCHHHHHHHH
EIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISSKSVRIELHLNPLINEGMT
HCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEEECHHHHCCCC
GCGLWIINPPYTFPSEIKLVLETLTTYFNPGSSSYMIESGSKLCHEL
CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHCC
>Mature Secondary Structure
MKPSFMLSYQHGYHAGNFADVIKHITLTRLLAYLTHKDKPLFYLETHSGRGIYDLKDKQS
CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEECCCCHH
LKTEEYKEGINPVWLDRENLPSLFLEYISVIKQINLNSTLSYYPGSPYFAINQLRSQDRL
CCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCCCCE
YLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYK
EEEEECCCCEEEEEECCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEECCCHHHHHHHH
EIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISSKSVRIELHLNPLINEGMT
HCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEEECHHHHCCCC
GCGLWIINPPYTFPSEIKLVLETLTTYFNPGSSSYMIESGSKLCHEL
CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 7542800; 10675023 [H]