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The map label for this gene is qseB [H]

Identifier: 52841523

GI number: 52841523

Start: 1420088

End: 1420765

Strand: Reverse

Name: qseB [H]

Synonym: lpg1292

Alternate gene names: 52841523

Gene position: 1420765-1420088 (Counterclockwise)

Preceding gene: 52841524

Following gene: 52841522

Centisome position: 41.81

GC content: 38.94

Gene sequence:

>678_bases
ATGAGATTATTACTTGTTGAAGACGATGAACTGCTTGGCGATGCAGTAAAAGCCGGACTGACACAATTTGGTTATGTTGT
TGACTGGCTAAAAGATGGCGAAGCTGCTCGGGCGGCTCTCAAATCAGAGTCTTTTGAATTAATTATTCTTGACTTGGGAT
TACCTAAATTATCCGGTTTATCATTATTGCAAAACATCAGACATGATGGAAATAGCACACCTGTGATTATTCTTACAGCT
CGAGAATCAATAGAAGATCGGGTAAAAGGCTTAGATAGCGGTGCTGACGATTATCATATTAAGCCTTTTGATTTAAACGA
ATTAAGTGCAAGGATTAGAGCATTGGTAAGGCGCTCTCAGGGCAGAGCTGATTCCGTGTTGCAATATAAAAATATTACTC
TCGATCCTGCTGCTCATTCTGTCTTCGTGGATGATGTACTCGTCAATGTTCCAAGAAGAGAATTTGCTCTATTGCAGAAA
TTACTTGAAAACAGTGGCCAGGTTTTATCTCGAGAACAATTAATGCAGAGTATTTATGGCTGGGAAGAAGACGTGGACAG
TAATGCTCTCGAAGTTCATATACATAATTTACGTAAAAAACTTAACGCAAACTTTATCCGCACTATACGTGGTGTAGGAT
ATATGGCTGAAAAAAATGACAGTGTACTTCTATCGTGA

Upstream 100 bases:

>100_bases
AACAAAACACACAGATGAAAAAAGCTTTGAAAAACAATAGTGATATCTCTGTATCTGCAGAAAAATATAGCATGTAATAA
GAGAAAAAGTAGGAGCACCG

Downstream 100 bases:

>100_bases
AATCGTCCATTCGAAAATTTTTATTAATTAATCTGCTTCTTGCAATTACTATTACTACAACATTAACTGCTATTGGTAAC
TATTATCTTGATCAAAAAGA

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MRLLLVEDDELLGDAVKAGLTQFGYVVDWLKDGEAARAALKSESFELIILDLGLPKLSGLSLLQNIRHDGNSTPVIILTA
RESIEDRVKGLDSGADDYHIKPFDLNELSARIRALVRRSQGRADSVLQYKNITLDPAAHSVFVDDVLVNVPRREFALLQK
LLENSGQVLSREQLMQSIYGWEEDVDSNALEVHIHNLRKKLNANFIRTIRGVGYMAEKNDSVLLS

Sequences:

>Translated_225_residues
MRLLLVEDDELLGDAVKAGLTQFGYVVDWLKDGEAARAALKSESFELIILDLGLPKLSGLSLLQNIRHDGNSTPVIILTA
RESIEDRVKGLDSGADDYHIKPFDLNELSARIRALVRRSQGRADSVLQYKNITLDPAAHSVFVDDVLVNVPRREFALLQK
LLENSGQVLSREQLMQSIYGWEEDVDSNALEVHIHNLRKKLNANFIRTIRGVGYMAEKNDSVLLS
>Mature_225_residues
MRLLLVEDDELLGDAVKAGLTQFGYVVDWLKDGEAARAALKSESFELIILDLGLPKLSGLSLLQNIRHDGNSTPVIILTA
RESIEDRVKGLDSGADDYHIKPFDLNELSARIRALVRRSQGRADSVLQYKNITLDPAAHSVFVDDVLVNVPRREFALLQK
LLENSGQVLSREQLMQSIYGWEEDVDSNALEVHIHNLRKKLNANFIRTIRGVGYMAEKNDSVLLS

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=214, Percent_Identity=46.2616822429907, Blast_Score=213, Evalue=6e-57,
Organism=Escherichia coli, GI1790552, Length=220, Percent_Identity=42.2727272727273, Blast_Score=177, Evalue=6e-46,
Organism=Escherichia coli, GI87082012, Length=218, Percent_Identity=40.3669724770642, Blast_Score=164, Evalue=4e-42,
Organism=Escherichia coli, GI1786784, Length=226, Percent_Identity=36.7256637168142, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1787375, Length=221, Percent_Identity=36.6515837104072, Blast_Score=144, Evalue=5e-36,
Organism=Escherichia coli, GI1786599, Length=220, Percent_Identity=35.9090909090909, Blast_Score=133, Evalue=8e-33,
Organism=Escherichia coli, GI1790860, Length=217, Percent_Identity=35.4838709677419, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1789809, Length=226, Percent_Identity=33.1858407079646, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1786911, Length=222, Percent_Identity=33.7837837837838, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI2367329, Length=227, Percent_Identity=37.0044052863436, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1787229, Length=221, Percent_Identity=31.2217194570136, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1788394, Length=227, Percent_Identity=32.15859030837, Blast_Score=110, Evalue=5e-26,
Organism=Escherichia coli, GI1790863, Length=226, Percent_Identity=30.0884955752212, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI145693140, Length=231, Percent_Identity=26.4069264069264, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1787487, Length=119, Percent_Identity=31.9327731092437, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1790437, Length=151, Percent_Identity=29.1390728476821, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788550, Length=108, Percent_Identity=30.5555555555556, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790299, Length=148, Percent_Identity=29.0540540540541, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 25176; Mature: 25176

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLLVEDDELLGDAVKAGLTQFGYVVDWLKDGEAARAALKSESFELIILDLGLPKLSGL
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECCCCCCHHH
SLLQNIRHDGNSTPVIILTARESIEDRVKGLDSGADDYHIKPFDLNELSARIRALVRRSQ
HHHHHHHHCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
GRADSVLQYKNITLDPAAHSVFVDDVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYG
CCHHHHHHHCCCEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
WEEDVDSNALEVHIHNLRKKLNANFIRTIRGVGYMAEKNDSVLLS
CCCCCCCCCEEEHHHHHHHHHCHHHHHHHHHCCCEECCCCCEECC
>Mature Secondary Structure
MRLLLVEDDELLGDAVKAGLTQFGYVVDWLKDGEAARAALKSESFELIILDLGLPKLSGL
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECCCCCCHHH
SLLQNIRHDGNSTPVIILTARESIEDRVKGLDSGADDYHIKPFDLNELSARIRALVRRSQ
HHHHHHHHCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
GRADSVLQYKNITLDPAAHSVFVDDVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYG
CCHHHHHHHCCCEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
WEEDVDSNALEVHIHNLRKKLNANFIRTIRGVGYMAEKNDSVLLS
CCCCCCCCCEEEHHHHHHHHHCHHHHHHHHHCCCEECCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]