Click here to switch to the map view.

The map label for this gene is virD4

Identifier: 52841477

GI number: 52841477

Start: 1374382

End: 1376457

Strand: Reverse

Name: virD4

Synonym: lpg1245

Alternate gene names: 52841477

Gene position: 1376457-1374382 (Counterclockwise)

Preceding gene: 52841478

Following gene: 52841476

Centisome position: 40.51

GC content: 44.12

Gene sequence:

>2076_bases
ATGCCAATAACCCAAAAGTGGCCTTCATGCGCATGGCGCAACTCTACAAGCTTAATCAGGTTGCAGGCATGGATGAAGCT
GATATTTACAAGGTGTTACATGAAGTCATTGATGTCATCGTCCAGTTACAAAAAACGCCTGACGGCAGGCGTTTGGTGGA
GGTGTATTATAAACAGGCGTAATCCATGGGTTGTTACCATTACCTTGATAGGTGGGCTTGCTATAACCGGCCAAATGGCA
GTGCTGTTAACTGGGATCGCAGAATGGGCAAGTCCGTTGGTATTGGTTGATTTATTAACACGGGGATTTTATTGGGAAAC
AGCCATAGCAAGTGGTATCACTGCGCTTTTGATGAGTTGTGTGGTTGGCTTTTTGAAACAGGGATTTTACCGATACCTTT
CGTTTCTAATCAGCAGCATTCTGCTGGGTGGAATGGTTGTGTTTCTACTGGGATTTGAGCTTTATAGCTGGATTTTTTTA
AGTTCTGTACAAAGCCTCTCAGGACTCATGGAGCTTGCCTTCCTTCGTTATCAAGAACCTGAGCTGTGGCATCTTTTCCT
GACGGTCGAGGGGATTGTGTTTATCCTGACGTTTTTGGCTATTGCGCTTTATCTGTTTCATTGGCTTAAGCCCAACAATA
AGGCACTCGGTAACGCGCATTTTTCAAATGGTTTTGAAACTAAAAAGGCTGGATTTTTCGAGCGTCAGGATCAAAGCATC
GTTATTGGTAAAAAATACGGTGCGCCACTTTACTCCAACGGCTTTGAACATGTTTTGGTTTTTGCGCCCACGGGAAGCGG
TAAAACACGAAGTATCGGCATACCCAATCTTTTTAATTACCCCTATTCGGTGGTGTGTAATGATGTAAAGCTCACGCTGT
TTAGGACCACATCAGGCTACCGTGAGCGAGTATTAGGACATCGATGCTTTTGCTGGGCACCTGCCGATGAGAACCGAATC
ACCCACTGCTACAATCCATTGTCCTTAATTTCCGAGGACAAAATTCAACGCCTGACCGATATTCAGCGCATAGCCCATAT
TTTAATGCCAGACAATAAAAAATCCGACCCCATTTGGCAGCAAGCCTCACGTAAGTTATTTAAAGTGGCTGTGTTGTACC
TGCTGGACACACCTGAAAGGCCCACCACGCTTGGCGAAATAAATCGCTTGGTCAAACAGGCTGGATTTGATGATTGGCTG
GCTTCCGTCTTGGAAGAAACCAATCATCTCGACCCAGAGTTTTATCGCAACGGATACTCTTATCTGAATAATCATGAAAA
AACGAGAAGCTCAATTCTTGAAACCTTTTCGGGATATTTTGAGTTATTCGATGATCCGACCATTGACGCAGCCACAGCAC
GTTCTGATTTTGATCTGCGCCAATTAAGACGAGAAAAAATAACGATTTACATAGGCTTTACCGATGATGATATGGAACGG
CTCTCACCATTGCTAACACTGTTTTGGCAGCAGCTTATTTCTGTCATGATTAAAAACATCCCCGACCCAGTGGATGAACC
CTATCCTCTGTTATGCCTGATTGATGAGTTTTCATCATTAGGCCGTATTGAAAGGCTAAGGCGTTCGCTTAAATTATTGC
GCGAATACCGTGTGCGTTGTGTACTCATCATGCAATACATAGCCCAAACCTATGAACAATACACCCATGATGAAGCCAAA
GCCTTTACCAACATTAAAACTAAAATAGCTTTTGCTACCGAAGACATCTTTGATGCGGAGTATGTCAGTAAATTGTTAGG
TACACGCACCGTGAAAGTATCCGCAGGCTCCACCAGTACCCAAACCCAAGGTTATTCCGAGTCTAAAAGCTATAACTATC
AGGCCATCCCTTTATTAAGACCGGATGAAGTCATGCGTTTACCCGAAGATCAAACCCTGATTATGCGAACAGGCCATGCG
CCAGTAAAAGCAGAACAAATGGTTTGGTATTTGGATACCACAATGAAGCATTTAGCCTGCGGCAGTACCGAAGTACCGCG
CCAAAATGTTACGCATCATCCATTTGTCCATCAGGCATCGGATAAATCGCTGATGCCTGAAGCACTCGAACTATAA

Upstream 100 bases:

>100_bases
AGACCCGACCGCATCATCATGGGCGAAATTCGTGGGCGAGAACTCTTTGATTTTGTATCAGCCTGTTCCACAGGGCATAG
CGGTGCACTGGCTACCATCC

Downstream 100 bases:

>100_bases
ACCACACAGGAGGAAACAAAGCCAGTAACAAAATCACAAAGGATGCTCTTTAAAGAGATTATGGATTCATACAGACTTAA
TTGATGTGAGAATCAAAATG

Product: LvhD4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 691; Mature: 690

Protein sequence:

>691_residues
MPITQKWPSCAWRNSTSLIRLQAWMKLIFTRCYMKSLMSSSSYKKRLTAGVWWRCIINRRNPWVVTITLIGGLAITGQMA
VLLTGIAEWASPLVLVDLLTRGFYWETAIASGITALLMSCVVGFLKQGFYRYLSFLISSILLGGMVVFLLGFELYSWIFL
SSVQSLSGLMELAFLRYQEPELWHLFLTVEGIVFILTFLAIALYLFHWLKPNNKALGNAHFSNGFETKKAGFFERQDQSI
VIGKKYGAPLYSNGFEHVLVFAPTGSGKTRSIGIPNLFNYPYSVVCNDVKLTLFRTTSGYRERVLGHRCFCWAPADENRI
THCYNPLSLISEDKIQRLTDIQRIAHILMPDNKKSDPIWQQASRKLFKVAVLYLLDTPERPTTLGEINRLVKQAGFDDWL
ASVLEETNHLDPEFYRNGYSYLNNHEKTRSSILETFSGYFELFDDPTIDAATARSDFDLRQLRREKITIYIGFTDDDMER
LSPLLTLFWQQLISVMIKNIPDPVDEPYPLLCLIDEFSSLGRIERLRRSLKLLREYRVRCVLIMQYIAQTYEQYTHDEAK
AFTNIKTKIAFATEDIFDAEYVSKLLGTRTVKVSAGSTSTQTQGYSESKSYNYQAIPLLRPDEVMRLPEDQTLIMRTGHA
PVKAEQMVWYLDTTMKHLACGSTEVPRQNVTHHPFVHQASDKSLMPEALEL

Sequences:

>Translated_691_residues
MPITQKWPSCAWRNSTSLIRLQAWMKLIFTRCYMKSLMSSSSYKKRLTAGVWWRCIINRRNPWVVTITLIGGLAITGQMA
VLLTGIAEWASPLVLVDLLTRGFYWETAIASGITALLMSCVVGFLKQGFYRYLSFLISSILLGGMVVFLLGFELYSWIFL
SSVQSLSGLMELAFLRYQEPELWHLFLTVEGIVFILTFLAIALYLFHWLKPNNKALGNAHFSNGFETKKAGFFERQDQSI
VIGKKYGAPLYSNGFEHVLVFAPTGSGKTRSIGIPNLFNYPYSVVCNDVKLTLFRTTSGYRERVLGHRCFCWAPADENRI
THCYNPLSLISEDKIQRLTDIQRIAHILMPDNKKSDPIWQQASRKLFKVAVLYLLDTPERPTTLGEINRLVKQAGFDDWL
ASVLEETNHLDPEFYRNGYSYLNNHEKTRSSILETFSGYFELFDDPTIDAATARSDFDLRQLRREKITIYIGFTDDDMER
LSPLLTLFWQQLISVMIKNIPDPVDEPYPLLCLIDEFSSLGRIERLRRSLKLLREYRVRCVLIMQYIAQTYEQYTHDEAK
AFTNIKTKIAFATEDIFDAEYVSKLLGTRTVKVSAGSTSTQTQGYSESKSYNYQAIPLLRPDEVMRLPEDQTLIMRTGHA
PVKAEQMVWYLDTTMKHLACGSTEVPRQNVTHHPFVHQASDKSLMPEALEL
>Mature_690_residues
PITQKWPSCAWRNSTSLIRLQAWMKLIFTRCYMKSLMSSSSYKKRLTAGVWWRCIINRRNPWVVTITLIGGLAITGQMAV
LLTGIAEWASPLVLVDLLTRGFYWETAIASGITALLMSCVVGFLKQGFYRYLSFLISSILLGGMVVFLLGFELYSWIFLS
SVQSLSGLMELAFLRYQEPELWHLFLTVEGIVFILTFLAIALYLFHWLKPNNKALGNAHFSNGFETKKAGFFERQDQSIV
IGKKYGAPLYSNGFEHVLVFAPTGSGKTRSIGIPNLFNYPYSVVCNDVKLTLFRTTSGYRERVLGHRCFCWAPADENRIT
HCYNPLSLISEDKIQRLTDIQRIAHILMPDNKKSDPIWQQASRKLFKVAVLYLLDTPERPTTLGEINRLVKQAGFDDWLA
SVLEETNHLDPEFYRNGYSYLNNHEKTRSSILETFSGYFELFDDPTIDAATARSDFDLRQLRREKITIYIGFTDDDMERL
SPLLTLFWQQLISVMIKNIPDPVDEPYPLLCLIDEFSSLGRIERLRRSLKLLREYRVRCVLIMQYIAQTYEQYTHDEAKA
FTNIKTKIAFATEDIFDAEYVSKLLGTRTVKVSAGSTSTQTQGYSESKSYNYQAIPLLRPDEVMRLPEDQTLIMRTGHAP
VKAEQMVWYLDTTMKHLACGSTEVPRQNVTHHPFVHQASDKSLMPEALEL

Specific function: Unknown

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virD4/traG family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003688 [H]

Pfam domain/function: PF02534 TraG [H]

EC number: NA

Molecular weight: Translated: 79343; Mature: 79212

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPITQKWPSCAWRNSTSLIRLQAWMKLIFTRCYMKSLMSSSSYKKRLTAGVWWRCIINRR
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEECCC
NPWVVTITLIGGLAITGQMAVLLTGIAEWASPLVLVDLLTRGFYWETAIASGITALLMSC
CCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
VVGFLKQGFYRYLSFLISSILLGGMVVFLLGFELYSWIFLSSVQSLSGLMELAFLRYQEP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ELWHLFLTVEGIVFILTFLAIALYLFHWLKPNNKALGNAHFSNGFETKKAGFFERQDQSI
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEE
VIGKKYGAPLYSNGFEHVLVFAPTGSGKTRSIGIPNLFNYPYSVVCNDVKLTLFRTTSGY
EEECCCCCCCCCCCCCEEEEEEECCCCCCEECCCCHHHCCCHHEEECCEEEEEEECCCHH
RERVLGHRCFCWAPADENRITHCYNPLSLISEDKIQRLTDIQRIAHILMPDNKKSDPIWQ
HHHHHCCEEEEECCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
QASRKLFKVAVLYLLDTPERPTTLGEINRLVKQAGFDDWLASVLEETNHLDPEFYRNGYS
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHCHHH
YLNNHEKTRSSILETFSGYFELFDDPTIDAATARSDFDLRQLRREKITIYIGFTDDDMER
HHHCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHCEEEEEEEECCCHHHH
LSPLLTLFWQQLISVMIKNIPDPVDEPYPLLCLIDEFSSLGRIERLRRSLKLLREYRVRC
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLIMQYIAQTYEQYTHDEAKAFTNIKTKIAFATEDIFDAEYVSKLLGTRTVKVSAGSTST
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHCCCEEEEECCCCCC
QTQGYSESKSYNYQAIPLLRPDEVMRLPEDQTLIMRTGHAPVKAEQMVWYLDTTMKHLAC
CCCCCCCCCCCCEEEEECCCCHHHHHCCCCCEEEEECCCCCCCHHHEEHHHHHHHHHHHC
GSTEVPRQNVTHHPFVHQASDKSLMPEALEL
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC
>Mature Secondary Structure 
PITQKWPSCAWRNSTSLIRLQAWMKLIFTRCYMKSLMSSSSYKKRLTAGVWWRCIINRR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEECCC
NPWVVTITLIGGLAITGQMAVLLTGIAEWASPLVLVDLLTRGFYWETAIASGITALLMSC
CCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
VVGFLKQGFYRYLSFLISSILLGGMVVFLLGFELYSWIFLSSVQSLSGLMELAFLRYQEP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ELWHLFLTVEGIVFILTFLAIALYLFHWLKPNNKALGNAHFSNGFETKKAGFFERQDQSI
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEE
VIGKKYGAPLYSNGFEHVLVFAPTGSGKTRSIGIPNLFNYPYSVVCNDVKLTLFRTTSGY
EEECCCCCCCCCCCCCEEEEEEECCCCCCEECCCCHHHCCCHHEEECCEEEEEEECCCHH
RERVLGHRCFCWAPADENRITHCYNPLSLISEDKIQRLTDIQRIAHILMPDNKKSDPIWQ
HHHHHCCEEEEECCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
QASRKLFKVAVLYLLDTPERPTTLGEINRLVKQAGFDDWLASVLEETNHLDPEFYRNGYS
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHCHHH
YLNNHEKTRSSILETFSGYFELFDDPTIDAATARSDFDLRQLRREKITIYIGFTDDDMER
HHHCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHCEEEEEEEECCCHHHH
LSPLLTLFWQQLISVMIKNIPDPVDEPYPLLCLIDEFSSLGRIERLRRSLKLLREYRVRC
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLIMQYIAQTYEQYTHDEAKAFTNIKTKIAFATEDIFDAEYVSKLLGTRTVKVSAGSTST
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHCCCEEEEECCCCCC
QTQGYSESKSYNYQAIPLLRPDEVMRLPEDQTLIMRTGHAPVKAEQMVWYLDTTMKHLAC
CCCCCCCCCCCCEEEEECCCCHHHHHCCCCCEEEEECCCCCCCHHHEEHHHHHHHHHHHC
GSTEVPRQNVTHHPFVHQASDKSLMPEALEL
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3658701; 2822660 [H]