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The map label for this gene is flgD

Identifier: 52841450

GI number: 52841450

Start: 1343653

End: 1344330

Strand: Direct

Name: flgD

Synonym: lpg1218

Alternate gene names: 52841450

Gene position: 1343653-1344330 (Clockwise)

Preceding gene: 52841449

Following gene: 52841451

Centisome position: 39.55

GC content: 41.89

Gene sequence:

>678_bases
ATGACTACCAATTCAGTAAATGGTTCCAATTCAGCAGGTGGTTTAGGCTTGAATCAAATTGATTCAGGTAAAAGACAAAA
CTTGGGGCAACAGGATTTTTTGCGTTTGATGGTAGCACAAGTTCAAAATCAAGATCCTCTGCAACCACAGGCAAATGGGG
AGTTTTTATCTCAACTGGCTCAGTTTAGCACCAATGATGGAATCACAAAAATGCAAGAATCACTCCAACAATTAGCTTCA
TCTCTACAATCTAATCAAGCGCTTCAAGCATCCGCTTTGGTTGGCCGCAAGGTGTTAGTAAACAGCAATACCCTGAGCCT
GGGTACAGAAGGAGATGTAAAAGCTGCCATTGATATGGCACCTGGTGTTTCTAATCTTCGTGCCGCAATCTACACGGAAT
CTGGCGAGTTGATAAAAACTATTCCCTTGGGACAACCAGAACCCGGGTTTTTCCAATTTAGTTGGGATGGTACTGACCAA
AGTAATCAACGTTTAGCATCAGGAAGATATACAATAAAGGTTACTGGTACTTATGGCGGACAAGAAGTGGCATTGAAAAC
TATGACGTCAGCCAATGTCGATAGTGTTAGTCTTGGGCAAAATGGCGAGGATCTAAAGCTTAATGTAGCGGGCGTAGGAT
CAGTCTATTTAAGTCAGGTAAGGCAAATATCAGTATAA

Upstream 100 bases:

>100_bases
TTTCAGCTTCTCGTTCTTATCAAATGAATATTGAATTACTTAATACAACCAAACAACTTATGCAAAGGACGCTGCAATTA
GGCGAATAAGGGGGAAGGGA

Downstream 100 bases:

>100_bases
ATCAATGATTTCAGTCACCGTGGCCTTATTGAAACGATGGCTTAAGTCATAAGCGCATTGCTTATAAAGCAGTCAAGGGC
AAATGCTAAAAAATTATAAA

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MTTNSVNGSNSAGGLGLNQIDSGKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTNDGITKMQESLQQLAS
SLQSNQALQASALVGRKVLVNSNTLSLGTEGDVKAAIDMAPGVSNLRAAIYTESGELIKTIPLGQPEPGFFQFSWDGTDQ
SNQRLASGRYTIKVTGTYGGQEVALKTMTSANVDSVSLGQNGEDLKLNVAGVGSVYLSQVRQISV

Sequences:

>Translated_225_residues
MTTNSVNGSNSAGGLGLNQIDSGKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTNDGITKMQESLQQLAS
SLQSNQALQASALVGRKVLVNSNTLSLGTEGDVKAAIDMAPGVSNLRAAIYTESGELIKTIPLGQPEPGFFQFSWDGTDQ
SNQRLASGRYTIKVTGTYGGQEVALKTMTSANVDSVSLGQNGEDLKLNVAGVGSVYLSQVRQISV
>Mature_224_residues
TTNSVNGSNSAGGLGLNQIDSGKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTNDGITKMQESLQQLASS
LQSNQALQASALVGRKVLVNSNTLSLGTEGDVKAAIDMAPGVSNLRAAIYTESGELIKTIPLGQPEPGFFQFSWDGTDQS
NQRLASGRYTIKVTGTYGGQEVALKTMTSANVDSVSLGQNGEDLKLNVAGVGSVYLSQVRQISV

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=201, Percent_Identity=33.8308457711443, Blast_Score=111, Evalue=4e-26,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 23813; Mature: 23682

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTNSVNGSNSAGGLGLNQIDSGKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLA
CCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
QFSTNDGITKMQESLQQLASSLQSNQALQASALVGRKVLVNSNTLSLGTEGDVKAAIDMA
HHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEEEECCEEECCCCCCCEEEEECC
PGVSNLRAAIYTESGELIKTIPLGQPEPGFFQFSWDGTDQSNQRLASGRYTIKVTGTYGG
CCCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEECCCCCCCCEECCCEEEEEEEECCCC
QEVALKTMTSANVDSVSLGQNGEDLKLNVAGVGSVYLSQVRQISV
CEEEEEECCCCCCCEEECCCCCCCEEEEEECCCHHHHHHHHHCCC
>Mature Secondary Structure 
TTNSVNGSNSAGGLGLNQIDSGKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLA
CCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
QFSTNDGITKMQESLQQLASSLQSNQALQASALVGRKVLVNSNTLSLGTEGDVKAAIDMA
HHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEEEECCEEECCCCCCCEEEEECC
PGVSNLRAAIYTESGELIKTIPLGQPEPGFFQFSWDGTDQSNQRLASGRYTIKVTGTYGG
CCCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEECCCCCCCCEECCCEEEEEEEECCCC
QEVALKTMTSANVDSVSLGQNGEDLKLNVAGVGSVYLSQVRQISV
CEEEEEECCCCCCCEEECCCCCCCEEEEEECCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]