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The map label for this gene is yddE [C]

Identifier: 52841441

GI number: 52841441

Start: 1336110

End: 1336898

Strand: Direct

Name: yddE [C]

Synonym: lpg1209

Alternate gene names: 52841441

Gene position: 1336110-1336898 (Clockwise)

Preceding gene: 52841439

Following gene: 52841442

Centisome position: 39.32

GC content: 37.9

Gene sequence:

>789_bases
ATGAAAAGCTTACCAATCTATCAAGTGGATGCATTTGCCTCAAATTTATTCAAAGGTAATCCTGCTGCTGTTTGCCCGTT
AGATAAATGGTTAAGTGATGAGACTATGCAAGCCATTGCTGCTGAAAATAATTTATCTGAAACAGCCTTTTTTGTTCGAG
AAGATGAGGGATACAGGCTCAGATGGTTTACCCCCAATGAAGAAGTGGCATTATGTGGGCATGCTACTCTTGCCAGCTCT
TATGTACTTTTTAATCAATTGGGATTTTCTGGAAAAGAAATTTTATTTCATAGCTTGAGCGGTAAACTATGGGTTAAAAA
CACAGAGCAAGGCTTGGTTATGGATTTTCCAGCTCTACCTTATGAAGAAATCGATTTTAGAAGGGAACTAGAGCATTTGA
ATTTAAAAAAACCATTTAAGGTACTACAAAGTCAATTTGATTTGATGTTTGTGTATCAAAATGCAGAAGAAGTGAGTGAG
GCCAAGCCTGATTTGAATGCTGTGGCTCATCTTGACTATAGGGGGTTGATTTTAACTGCTCCAGGAACATCAACCGATGT
TTATTCTCGTTGTTTTTACCCTGGTTGTAATGTACCAGAAGACCCGGTAACAGGATCTGCTCATTGTGTTATTGCTCCTT
ATTGGTGTGAACGGTTAAAGAAGAACCATATAACTGCTTTACAAGGAGGTCTCAGACAAGGTGATCTTTATTGTGAAGTG
AAGGAAAACAGAGTGTTACTCTATGGAAATTGCCATCTTTATTTGGAAGGAAGAATATATTTGCCATGA

Upstream 100 bases:

>100_bases
TTTAGCAGAGAGGAAAGATACATAAATTTCTCACAATTAAATAGCTTGCTATATAATAACAAGCTATGTTATTATCTACA
AGTTGTTTTAGGAGACATCT

Downstream 100 bases:

>100_bases
AATATTTAACAACCTCAAGGCTTTTGCTAAGAGCTTGGGATAGAGAAGATACTATCCCTTTCTATAGAATGAGTCAGGAT
CCTCGGGTCATGAAGTATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MKSLPIYQVDAFASNLFKGNPAAVCPLDKWLSDETMQAIAAENNLSETAFFVREDEGYRLRWFTPNEEVALCGHATLASS
YVLFNQLGFSGKEILFHSLSGKLWVKNTEQGLVMDFPALPYEEIDFRRELEHLNLKKPFKVLQSQFDLMFVYQNAEEVSE
AKPDLNAVAHLDYRGLILTAPGTSTDVYSRCFYPGCNVPEDPVTGSAHCVIAPYWCERLKKNHITALQGGLRQGDLYCEV
KENRVLLYGNCHLYLEGRIYLP

Sequences:

>Translated_262_residues
MKSLPIYQVDAFASNLFKGNPAAVCPLDKWLSDETMQAIAAENNLSETAFFVREDEGYRLRWFTPNEEVALCGHATLASS
YVLFNQLGFSGKEILFHSLSGKLWVKNTEQGLVMDFPALPYEEIDFRRELEHLNLKKPFKVLQSQFDLMFVYQNAEEVSE
AKPDLNAVAHLDYRGLILTAPGTSTDVYSRCFYPGCNVPEDPVTGSAHCVIAPYWCERLKKNHITALQGGLRQGDLYCEV
KENRVLLYGNCHLYLEGRIYLP
>Mature_262_residues
MKSLPIYQVDAFASNLFKGNPAAVCPLDKWLSDETMQAIAAENNLSETAFFVREDEGYRLRWFTPNEEVALCGHATLASS
YVLFNQLGFSGKEILFHSLSGKLWVKNTEQGLVMDFPALPYEEIDFRRELEHLNLKKPFKVLQSQFDLMFVYQNAEEVSE
AKPDLNAVAHLDYRGLILTAPGTSTDVYSRCFYPGCNVPEDPVTGSAHCVIAPYWCERLKKNHITALQGGLRQGDLYCEV
KENRVLLYGNCHLYLEGRIYLP

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=288, Percent_Identity=37.5, Blast_Score=161, Evalue=5e-40,
Organism=Homo sapiens, GI74316009, Length=252, Percent_Identity=38.4920634920635, Blast_Score=147, Evalue=9e-36,
Organism=Escherichia coli, GI1787737, Length=227, Percent_Identity=34.3612334801762, Blast_Score=91, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17542160, Length=313, Percent_Identity=33.8658146964856, Blast_Score=138, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI17542154, Length=313, Percent_Identity=33.8658146964856, Blast_Score=138, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI17542158, Length=310, Percent_Identity=32.5806451612903, Blast_Score=126, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI17542152, Length=310, Percent_Identity=32.5806451612903, Blast_Score=126, Evalue=1e-29,
Organism=Saccharomyces cerevisiae, GI6321818, Length=290, Percent_Identity=28.9655172413793, Blast_Score=91, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 29731; Mature: 29731

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLPIYQVDAFASNLFKGNPAAVCPLDKWLSDETMQAIAAENNLSETAFFVREDEGYRL
CCCCCEEEHHHHHHHHCCCCCCEECCHHHHCCHHHHHHHHHCCCCCCEEEEEECCCCCEE
RWFTPNEEVALCGHATLASSYVLFNQLGFSGKEILFHSLSGKLWVKNTEQGLVMDFPALP
EEECCCCCEEEEECHHHHHHHHEEHHCCCCCHHEEEEECCCEEEEEECCCCEEEECCCCC
YEEIDFRRELEHLNLKKPFKVLQSQFDLMFVYQNAEEVSEAKPDLNAVAHLDYRGLILTA
HHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEECHHHHHHCCCCCCEEEEECCCEEEEEC
PGTSTDVYSRCFYPGCNVPEDPVTGSAHCVIAPYWCERLKKNHITALQGGLRQGDLYCEV
CCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCHHHHCCCCCCCEEEEE
KENRVLLYGNCHLYLEGRIYLP
ECCEEEEEEEEEEEEEEEEECC
>Mature Secondary Structure
MKSLPIYQVDAFASNLFKGNPAAVCPLDKWLSDETMQAIAAENNLSETAFFVREDEGYRL
CCCCCEEEHHHHHHHHCCCCCCEECCHHHHCCHHHHHHHHHCCCCCCEEEEEECCCCCEE
RWFTPNEEVALCGHATLASSYVLFNQLGFSGKEILFHSLSGKLWVKNTEQGLVMDFPALP
EEECCCCCEEEEECHHHHHHHHEEHHCCCCCHHEEEEECCCEEEEEECCCCEEEECCCCC
YEEIDFRRELEHLNLKKPFKVLQSQFDLMFVYQNAEEVSEAKPDLNAVAHLDYRGLILTA
HHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEECHHHHHHCCCCCCEEEEECCCEEEEEC
PGTSTDVYSRCFYPGCNVPEDPVTGSAHCVIAPYWCERLKKNHITALQGGLRQGDLYCEV
CCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCHHHHCCCCCCCEEEEE
KENRVLLYGNCHLYLEGRIYLP
ECCEEEEEEEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]