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The map label for this gene is ybbD [H]

Identifier: 52841424

GI number: 52841424

Start: 1320049

End: 1321236

Strand: Direct

Name: ybbD [H]

Synonym: lpg1191

Alternate gene names: 52841424

Gene position: 1320049-1321236 (Clockwise)

Preceding gene: 52841423

Following gene: 52841425

Centisome position: 38.85

GC content: 34.6

Gene sequence:

>1188_bases
TTGGCGCATATCGCAATAGAGAAAATTAAGCATTTTCTAATGAGTTTAGCATTGAAAATCAAGTCAATTATTTTATCTTT
TTTTCTTGTTTTGGTGACTACGGTAGCTTGTGCCACACAAGTGAGTTTGAGAGATAAAATTGGGCAAATGTTAATATTAG
GATTCCAGGGCAAAGTGGTTGACGAGAAATCACCTATTGCCCAGGCAATTGAGAAAAACAACATTGGTGGTGTTATTCTT
TTTGATTTTAATCAGCAGTCACAAACTTTTGATAAAAATATAGAAAGTCCGGAACAAGTTAACCGGTTAAATAATCAGTT
ACAAACACTTACGCAAAAAGCCAATCGTAAATATCATAGAGATAATTTACCATTACTTATTTCTGTTGATTACGAGGGGG
GAAACGTTAATCGATTGCATCCCCGTTATGGATTCCCTGAAATGCCTTCAGCAAAAGATATTGGCTCCATGTCTCTGGAA
AGAGCTGATGCATCAGCAGAATTGATGGCAAATACTTTAAAATCAACAGGATTTAATTTGAATTTTTTCCCTGAATTAGA
TGTGAATATAAATCCAGATAATCCTATCATAGGCAAAAAAGACAGGAGTTTCTCTTCGATACCGGAAATTGTCACTCAAT
ACGCGCAACTTTATACAGAGCAATTTATAAAACATCAAATACATTGTTCATATAAACATTTTCCTGGACATGGCAGTTCA
TTATCTGATTCACATTTGGGTTTTGTAGATATAAGTGACACCTGGAGCGAGCAAGAATTAATCCCTTTTTTACAATTATT
ATCTCAACCCAATCATTGCGATATGGTGATGATAGCTCATATTGTGAATAGAAAACTGGATATGACAGGGCTACCTGCCA
GCCTTTCTTACCAGATCATTAACGGATTATTGCGTCGTGATTTAAAATTTGACGGGGTTGTTATCACCGATGATATGCAA
ATGAAAGCAATAACGAATTATTATGGATTAGAAACTGCTGTTACTCTTTCAATTAATGCAGGAGCAGATATGCTAATATT
TGGTAATCAATTGGTAGAAAAATTTCAAGACTCGACAGAAATCATTGACATGATCGAGCAAAAAGTTCGATCGGGAGAGA
TTTCTGAACAAAGGATTAATGAAGCTTATCAACGAATTGTAAAAATGAAGAGGTCTTTTAATTATTAG

Upstream 100 bases:

>100_bases
TTGGCATTGGTATAAAGGGAACCTTGATTTTTAAATCAAGGATGGTATTAGGTTAATTTTTTTGTATAACATTTGATTGG
TTTGGTCTTAATATGTATAA

Downstream 100 bases:

>100_bases
AGATTTTTCTCGATTTACTCTGATAAAAGTACCTGATAATCTGCGAGCTATAGATAAGCTGAGGTATATATGCGATGCAG
GTCAATTATCAAAAAAACTA

Product: glycosy hydrolase family protein

Products: N-acetylglucosamin; anhydro-N-acetylmuramic acid [C]

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 395; Mature: 394

Protein sequence:

>395_residues
MAHIAIEKIKHFLMSLALKIKSIILSFFLVLVTTVACATQVSLRDKIGQMLILGFQGKVVDEKSPIAQAIEKNNIGGVIL
FDFNQQSQTFDKNIESPEQVNRLNNQLQTLTQKANRKYHRDNLPLLISVDYEGGNVNRLHPRYGFPEMPSAKDIGSMSLE
RADASAELMANTLKSTGFNLNFFPELDVNINPDNPIIGKKDRSFSSIPEIVTQYAQLYTEQFIKHQIHCSYKHFPGHGSS
LSDSHLGFVDISDTWSEQELIPFLQLLSQPNHCDMVMIAHIVNRKLDMTGLPASLSYQIINGLLRRDLKFDGVVITDDMQ
MKAITNYYGLETAVTLSINAGADMLIFGNQLVEKFQDSTEIIDMIEQKVRSGEISEQRINEAYQRIVKMKRSFNY

Sequences:

>Translated_395_residues
MAHIAIEKIKHFLMSLALKIKSIILSFFLVLVTTVACATQVSLRDKIGQMLILGFQGKVVDEKSPIAQAIEKNNIGGVIL
FDFNQQSQTFDKNIESPEQVNRLNNQLQTLTQKANRKYHRDNLPLLISVDYEGGNVNRLHPRYGFPEMPSAKDIGSMSLE
RADASAELMANTLKSTGFNLNFFPELDVNINPDNPIIGKKDRSFSSIPEIVTQYAQLYTEQFIKHQIHCSYKHFPGHGSS
LSDSHLGFVDISDTWSEQELIPFLQLLSQPNHCDMVMIAHIVNRKLDMTGLPASLSYQIINGLLRRDLKFDGVVITDDMQ
MKAITNYYGLETAVTLSINAGADMLIFGNQLVEKFQDSTEIIDMIEQKVRSGEISEQRINEAYQRIVKMKRSFNY
>Mature_394_residues
AHIAIEKIKHFLMSLALKIKSIILSFFLVLVTTVACATQVSLRDKIGQMLILGFQGKVVDEKSPIAQAIEKNNIGGVILF
DFNQQSQTFDKNIESPEQVNRLNNQLQTLTQKANRKYHRDNLPLLISVDYEGGNVNRLHPRYGFPEMPSAKDIGSMSLER
ADASAELMANTLKSTGFNLNFFPELDVNINPDNPIIGKKDRSFSSIPEIVTQYAQLYTEQFIKHQIHCSYKHFPGHGSSL
SDSHLGFVDISDTWSEQELIPFLQLLSQPNHCDMVMIAHIVNRKLDMTGLPASLSYQIINGLLRRDLKFDGVVITDDMQM
KAITNYYGLETAVTLSINAGADMLIFGNQLVEKFQDSTEIIDMIEQKVRSGEISEQRINEAYQRIVKMKRSFNY

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=284, Percent_Identity=28.5211267605634, Blast_Score=101, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: NA

Molecular weight: Translated: 44695; Mature: 44564

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHIAIEKIKHFLMSLALKIKSIILSFFLVLVTTVACATQVSLRDKIGQMLILGFQGKVV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCC
DEKSPIAQAIEKNNIGGVILFDFNQQSQTFDKNIESPEQVNRLNNQLQTLTQKANRKYHR
CCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
DNLPLLISVDYEGGNVNRLHPRYGFPEMPSAKDIGSMSLERADASAELMANTLKSTGFNL
CCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCE
NFFPELDVNINPDNPIIGKKDRSFSSIPEIVTQYAQLYTEQFIKHQIHCSYKHFPGHGSS
EECCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCC
LSDSHLGFVDISDTWSEQELIPFLQLLSQPNHCDMVMIAHIVNRKLDMTGLPASLSYQII
CCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHH
NGLLRRDLKFDGVVITDDMQMKAITNYYGLETAVTLSINAGADMLIFGNQLVEKFQDSTE
HHHHHHCCCCCCEEEECCCHHHHHHHHHCCCEEEEEEECCCCCEEEECHHHHHHHHHHHH
IIDMIEQKVRSGEISEQRINEAYQRIVKMKRSFNY
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AHIAIEKIKHFLMSLALKIKSIILSFFLVLVTTVACATQVSLRDKIGQMLILGFQGKVV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCC
DEKSPIAQAIEKNNIGGVILFDFNQQSQTFDKNIESPEQVNRLNNQLQTLTQKANRKYHR
CCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
DNLPLLISVDYEGGNVNRLHPRYGFPEMPSAKDIGSMSLERADASAELMANTLKSTGFNL
CCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCE
NFFPELDVNINPDNPIIGKKDRSFSSIPEIVTQYAQLYTEQFIKHQIHCSYKHFPGHGSS
EECCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCC
LSDSHLGFVDISDTWSEQELIPFLQLLSQPNHCDMVMIAHIVNRKLDMTGLPASLSYQII
CCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHH
NGLLRRDLKFDGVVITDDMQMKAITNYYGLETAVTLSINAGADMLIFGNQLVEKFQDSTE
HHHHHHCCCCCCEEEECCCHHHHHHHHHCCCEEEEEEECCCCCEEEECHHHHHHHHHHHH
IIDMIEQKVRSGEISEQRINEAYQRIVKMKRSFNY
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Cell Wall [C]

Specific reaction: Cell Wall = N-acetylglucosamin + anhydro-N-acetylmuramic acid [C]

General reaction: Hydrolyse [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]