Click here to switch to the map view.

The map label for this gene is 52841396

Identifier: 52841396

GI number: 52841396

Start: 1281791

End: 1282522

Strand: Reverse

Name: 52841396

Synonym: lpg1162

Alternate gene names: NA

Gene position: 1282522-1281791 (Counterclockwise)

Preceding gene: 52841400

Following gene: 52841394

Centisome position: 37.75

GC content: 43.72

Gene sequence:

>732_bases
ATGAAAAAATTTATCCTGTTCCCTTTAATTTCCGCCCTGTCCAGTACTTTTGTCCATGCTGGTGGTATGGGTGATTCCAA
CTCTTGTTGCTCTACTTTTGCGTCACTTGAGGGTGGATACACCTGGAGTTCCATTGATGGATACAATTTTACTATAGTCG
GTACCAACAATACTCTTACCTCGACAGAAGATAAACAAGGTTATAGTGGCCGTCTGGCTGTCGGTGTGCTTAGTATGATA
GATGATCAATATGGATTCACCGGCGAAGTAGGCTGGGGGTACTATGGTAGAACAACCATTAATCCAAGTGTTGCAGGAGC
TTTAGGCCAGGTTCCAGCTGCCTTGACGATCAAGCATACCTTGAGCGGATTTGATGCCCTGCTCGGCGTTACCTATTTTC
AAAACTATTTTAGCTGGTCTGCCAAGGCGGGCGCGCTCATTCAAAATATGCAAGTAGACTCTAGTGCCTTTTTCACTCCC
CAAATATTTCCTATAGTGGATAATTTCGATATGAAAACGAACAGGACTGCTGTTTTGCCAGCAGCAAAGCTGGGAGTTGC
CTATAACTTTGATTCTAACTGGGCTATTACCGGCTCTTATTTGTTCGCGCTTGGAGCAAATCCAGGAACAACCGCGACTT
TCAATCCTAACACATTAAGATCCAGTCTGAGTATTGACGATGAAAATCCCATGATGAATGCTATTTTATTTGGGGTTCAA
TATACCGCTTAG

Upstream 100 bases:

>100_bases
TAAGAAACTAAGATCAATATTAATTTTACTGGTAATTCCCTATCAACTGATTTAAATTATTGACTTTTACAATAATAAAC
ATGGAATGAGTTACTAAATC

Downstream 100 bases:

>100_bases
TTTAATATTATTTAAAAACGTCACCTTTTATATGGGGTCAAGTATTTGGCCCCAAGACTTTTTAACTTATTCCTTCAACA
GGTCTTCACAGGACTCAAAA

Product: OmpA-like transmembrane domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MKKFILFPLISALSSTFVHAGGMGDSNSCCSTFASLEGGYTWSSIDGYNFTIVGTNNTLTSTEDKQGYSGRLAVGVLSMI
DDQYGFTGEVGWGYYGRTTINPSVAGALGQVPAALTIKHTLSGFDALLGVTYFQNYFSWSAKAGALIQNMQVDSSAFFTP
QIFPIVDNFDMKTNRTAVLPAAKLGVAYNFDSNWAITGSYLFALGANPGTTATFNPNTLRSSLSIDDENPMMNAILFGVQ
YTA

Sequences:

>Translated_243_residues
MKKFILFPLISALSSTFVHAGGMGDSNSCCSTFASLEGGYTWSSIDGYNFTIVGTNNTLTSTEDKQGYSGRLAVGVLSMI
DDQYGFTGEVGWGYYGRTTINPSVAGALGQVPAALTIKHTLSGFDALLGVTYFQNYFSWSAKAGALIQNMQVDSSAFFTP
QIFPIVDNFDMKTNRTAVLPAAKLGVAYNFDSNWAITGSYLFALGANPGTTATFNPNTLRSSLSIDDENPMMNAILFGVQ
YTA
>Mature_243_residues
MKKFILFPLISALSSTFVHAGGMGDSNSCCSTFASLEGGYTWSSIDGYNFTIVGTNNTLTSTEDKQGYSGRLAVGVLSMI
DDQYGFTGEVGWGYYGRTTINPSVAGALGQVPAALTIKHTLSGFDALLGVTYFQNYFSWSAKAGALIQNMQVDSSAFFTP
QIFPIVDNFDMKTNRTAVLPAAKLGVAYNFDSNWAITGSYLFALGANPGTTATFNPNTLRSSLSIDDENPMMNAILFGVQ
YTA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26015; Mature: 26015

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFILFPLISALSSTFVHAGGMGDSNSCCSTFASLEGGYTWSSIDGYNFTIVGTNNTLT
CCCEEHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCCC
STEDKQGYSGRLAVGVLSMIDDQYGFTGEVGWGYYGRTTINPSVAGALGQVPAALTIKHT
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEHH
LSGFDALLGVTYFQNYFSWSAKAGALIQNMQVDSSAFFTPQIFPIVDNFDMKTNRTAVLP
HHHHHHHHHHHHHHHHHCCCCCCCHHEEEEEECCCEEECCEEEEEECCCCCCCCCEEEEE
AAKLGVAYNFDSNWAITGSYLFALGANPGTTATFNPNTLRSSLSIDDENPMMNAILFGVQ
HHHHEEEEECCCCEEEEEEEEEEEECCCCCEEEECCHHHHHCCCCCCCCCCEEEEEEEEE
YTA
ECC
>Mature Secondary Structure
MKKFILFPLISALSSTFVHAGGMGDSNSCCSTFASLEGGYTWSSIDGYNFTIVGTNNTLT
CCCEEHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCCC
STEDKQGYSGRLAVGVLSMIDDQYGFTGEVGWGYYGRTTINPSVAGALGQVPAALTIKHT
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEHH
LSGFDALLGVTYFQNYFSWSAKAGALIQNMQVDSSAFFTPQIFPIVDNFDMKTNRTAVLP
HHHHHHHHHHHHHHHHHCCCCCCCHHEEEEEECCCEEECCEEEEEECCCCCCCCCEEEEE
AAKLGVAYNFDSNWAITGSYLFALGANPGTTATFNPNTLRSSLSIDDENPMMNAILFGVQ
HHHHEEEEECCCCEEEEEEEEEEEECCCCCEEEECCHHHHHCCCCCCCCCCEEEEEEEEE
YTA
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA