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The map label for this gene is potC

Identifier: 52841373

GI number: 52841373

Start: 1254265

End: 1255032

Strand: Reverse

Name: potC

Synonym: lpg1139

Alternate gene names: 52841373

Gene position: 1255032-1254265 (Counterclockwise)

Preceding gene: 52841374

Following gene: 52841372

Centisome position: 36.94

GC content: 38.28

Gene sequence:

>768_bases
ATGAAAACAATGACACAGCGCCTGTTTCTTTCTTTAGTTTATGCTTTTCTTTATATCCCCATTGCAATACTGGTGCTCTA
TTCAGTAAATGATGCCAAATTTTCATTACAATGGCATGGGTTTTCTTTGCGATGGTACAAAGAACTATTTCATGATCGAG
GCTTGTGGTCTGCTGTTTTCAATTCTATCACCCTGGGCCTAACATCCTCTCTTATCGCTACAACAATGGGGCTATTGGCC
TCAATCAACTTATTTTTATTTCGTACAAGACACCGCCAGATCCTATATACCTTATTACTATTACTTATTATTATTCCTGA
CATAGTCCTGGGGGTTGCCTTATTAATTTTCTTTAATATTACCCAAGTACCGCTTGGCTTCTTGAGCCTTTTAGTTGCCC
ATATTACATTCTCCATTCCTTTTGTTATCTTGACCATTAATTCACGTATAAACACTTTAAATCCCAACATTTATTTTGGC
GCCCTCGATCTTGGCGCCAGTCGTTATTTTGCTTTAACAAGAGTCTTGCTTCCTTTATTGTGGCCTGCGGTTTTAAGCGC
TTTTTTATTAAGTTTCACTTTGTCATTTGATGACGTCATTATCAGCTATTTTGTGGCAGGCCCTGATTTTACTATCTTGC
CTTTGACTATCTACTCTTTAGTCCGCGCTGGCGTCACGCCTGAACTCAATGCATTGTGTTCAATTACGTTCGTTTTATCG
ATGATTCTCGTTATTATCTCTCATCGCTTGTCAGGTAAATTGATATGA

Upstream 100 bases:

>100_bases
TGAGCGATTGGCCTCAGGGAGCCGCTACCAGTGTGCTATTAACTTCCGTTCTGCTTATTTTAATGTTCATTTTTCGGCGA
CAGAACAATGAGGTCATTCG

Downstream 100 bases:

>100_bases
AAATTTTTTCATTGCTGCTCGCTCTTCTTACATTTAAGGCATTCTCCAATCCAGTCGTCAATGTCTATGCCTGGGGAGGT
GAAATCCCTAAAAAAATAAT

Product: spermidine/putrescine ABC transporter permease protein PotC

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MKTMTQRLFLSLVYAFLYIPIAILVLYSVNDAKFSLQWHGFSLRWYKELFHDRGLWSAVFNSITLGLTSSLIATTMGLLA
SINLFLFRTRHRQILYTLLLLLIIIPDIVLGVALLIFFNITQVPLGFLSLLVAHITFSIPFVILTINSRINTLNPNIYFG
ALDLGASRYFALTRVLLPLLWPAVLSAFLLSFTLSFDDVIISYFVAGPDFTILPLTIYSLVRAGVTPELNALCSITFVLS
MILVIISHRLSGKLI

Sequences:

>Translated_255_residues
MKTMTQRLFLSLVYAFLYIPIAILVLYSVNDAKFSLQWHGFSLRWYKELFHDRGLWSAVFNSITLGLTSSLIATTMGLLA
SINLFLFRTRHRQILYTLLLLLIIIPDIVLGVALLIFFNITQVPLGFLSLLVAHITFSIPFVILTINSRINTLNPNIYFG
ALDLGASRYFALTRVLLPLLWPAVLSAFLLSFTLSFDDVIISYFVAGPDFTILPLTIYSLVRAGVTPELNALCSITFVLS
MILVIISHRLSGKLI
>Mature_255_residues
MKTMTQRLFLSLVYAFLYIPIAILVLYSVNDAKFSLQWHGFSLRWYKELFHDRGLWSAVFNSITLGLTSSLIATTMGLLA
SINLFLFRTRHRQILYTLLLLLIIIPDIVLGVALLIFFNITQVPLGFLSLLVAHITFSIPFVILTINSRINTLNPNIYFG
ALDLGASRYFALTRVLLPLLWPAVLSAFLLSFTLSFDDVIISYFVAGPDFTILPLTIYSLVRAGVTPELNALCSITFVLS
MILVIISHRLSGKLI

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=240, Percent_Identity=43.3333333333333, Blast_Score=196, Evalue=1e-51,
Organism=Escherichia coli, GI1787081, Length=231, Percent_Identity=37.2294372294372, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1787714, Length=202, Percent_Identity=34.6534653465347, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28680; Mature: 28680

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTMTQRLFLSLVYAFLYIPIAILVLYSVNDAKFSLQWHGFSLRWYKELFHDRGLWSAVF
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCHHHHHH
NSITLGLTSSLIATTMGLLASINLFLFRTRHRQILYTLLLLLIIIPDIVLGVALLIFFNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TQVPLGFLSLLVAHITFSIPFVILTINSRINTLNPNIYFGALDLGASRYFALTRVLLPLL
HHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEEHHCHHHHHHHHHHHHHHH
WPAVLSAFLLSFTLSFDDVIISYFVAGPDFTILPLTIYSLVRAGVTPELNALCSITFVLS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
MILVIISHRLSGKLI
HHHHHHHHHHCCCCC
>Mature Secondary Structure
MKTMTQRLFLSLVYAFLYIPIAILVLYSVNDAKFSLQWHGFSLRWYKELFHDRGLWSAVF
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCHHHHHH
NSITLGLTSSLIATTMGLLASINLFLFRTRHRQILYTLLLLLIIIPDIVLGVALLIFFNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TQVPLGFLSLLVAHITFSIPFVILTINSRINTLNPNIYFGALDLGASRYFALTRVLLPLL
HHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEEHHCHHHHHHHHHHHHHHH
WPAVLSAFLLSFTLSFDDVIISYFVAGPDFTILPLTIYSLVRAGVTPELNALCSITFVLS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
MILVIISHRLSGKLI
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]