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The map label for this gene is recO

Identifier: 52841178

GI number: 52841178

Start: 1023865

End: 1024554

Strand: Direct

Name: recO

Synonym: lpg0943

Alternate gene names: 52841178

Gene position: 1023865-1024554 (Clockwise)

Preceding gene: 52841177

Following gene: 52841181

Centisome position: 30.13

GC content: 42.17

Gene sequence:

>690_bases
ATGACCAGTAAATCGCTGAATGCTTGGGTAATTCATAAGCAATGGTCTGGAGATACCAGTGCCAGACTAAAGCTTTTTAC
TAGGGAACTGGGATTAATTAATTGCTTGTGCAAGGGAGGGCGAACTCCCAAGAAACAGTCATTACTTCAAGCTTTTATTC
CTCTGTGGGTTAGTATCGAAGAGCGTTATGATCAATATTACACACGAAACATTGAAAGCACTTCATCCAGACTGGATCTT
GAGGGACATTCTCTTTTTTCAGGCCTGTACATCAATGAGTTACTCTATTATACGCTGAGCCCGGATTTCCCCGACCCGGA
TTTATTTGATGCTTACTTGTTCACCTTAAATGGCATAGCATTAGCTAGAGAAAGAGAGGCGATAGAAGCTTTGCTGCGTC
GTTTTGAATGGGCTTTGCTTAAGGCTTGTGGATACACGTTTTCATTTCTTCATGAGGCGCGAACGGGAGAGTTAATTGTT
CCCGATTCTTATTACCAATTTGTAGCTGGGGAGGGTTTTATTTTAGGTGGTGATAAAGAAATACCTGGTGAGCATTTACT
TGCTATAGCAGCAGATAATTTAAGTGAGTCCGCTTATTTAAAATCAGCGAAATTCATTATGCGTCAGGCAATCAATCATC
TTTTGGGTGGACGGGAAATCAAGGCTCGGTCCTTGTATGGACCGGCCTGA

Upstream 100 bases:

>100_bases
GACATGGAAAAAATGCTAGATAAAAAGGTTTTTTTACAGTGTTGGTGTAAAGTAAAGTCAGGCTGGTCTGATGATGAGCG
AATACTGAAGCAATTGGGAT

Downstream 100 bases:

>100_bases
GATAGTGGTATGATCGCCAAGTGCTTCGATGCTATCAAATCAGGTCTAGGGTCTATTATGTGAGGTTAGGTCTGGATAGA
TTTTCGATTTCTTCCACAGG

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MTSKSLNAWVIHKQWSGDTSARLKLFTRELGLINCLCKGGRTPKKQSLLQAFIPLWVSIEERYDQYYTRNIESTSSRLDL
EGHSLFSGLYINELLYYTLSPDFPDPDLFDAYLFTLNGIALAREREAIEALLRRFEWALLKACGYTFSFLHEARTGELIV
PDSYYQFVAGEGFILGGDKEIPGEHLLAIAADNLSESAYLKSAKFIMRQAINHLLGGREIKARSLYGPA

Sequences:

>Translated_229_residues
MTSKSLNAWVIHKQWSGDTSARLKLFTRELGLINCLCKGGRTPKKQSLLQAFIPLWVSIEERYDQYYTRNIESTSSRLDL
EGHSLFSGLYINELLYYTLSPDFPDPDLFDAYLFTLNGIALAREREAIEALLRRFEWALLKACGYTFSFLHEARTGELIV
PDSYYQFVAGEGFILGGDKEIPGEHLLAIAADNLSESAYLKSAKFIMRQAINHLLGGREIKARSLYGPA
>Mature_228_residues
TSKSLNAWVIHKQWSGDTSARLKLFTRELGLINCLCKGGRTPKKQSLLQAFIPLWVSIEERYDQYYTRNIESTSSRLDLE
GHSLFSGLYINELLYYTLSPDFPDPDLFDAYLFTLNGIALAREREAIEALLRRFEWALLKACGYTFSFLHEARTGELIVP
DSYYQFVAGEGFILGGDKEIPGEHLLAIAADNLSESAYLKSAKFIMRQAINHLLGGREIKARSLYGPA

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

Organism=Escherichia coli, GI2367140, Length=225, Percent_Identity=34.6666666666667, Blast_Score=108, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 25943; Mature: 25812

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSKSLNAWVIHKQWSGDTSARLKLFTRELGLINCLCKGGRTPKKQSLLQAFIPLWVSIE
CCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
ERYDQYYTRNIESTSSRLDLEGHSLFSGLYINELLYYTLSPDFPDPDLFDAYLFTLNGIA
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHCCHH
LAREREAIEALLRRFEWALLKACGYTFSFLHEARTGELIVPDSYYQFVAGEGFILGGDKE
HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEECCHHHHHHCCCEEEECCCCC
IPGEHLLAIAADNLSESAYLKSAKFIMRQAINHLLGGREIKARSLYGPA
CCCHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC
>Mature Secondary Structure 
TSKSLNAWVIHKQWSGDTSARLKLFTRELGLINCLCKGGRTPKKQSLLQAFIPLWVSIE
CCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
ERYDQYYTRNIESTSSRLDLEGHSLFSGLYINELLYYTLSPDFPDPDLFDAYLFTLNGIA
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHCCHH
LAREREAIEALLRRFEWALLKACGYTFSFLHEARTGELIVPDSYYQFVAGEGFILGGDKE
HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEECCHHHHHHCCCEEEECCCCC
IPGEHLLAIAADNLSESAYLKSAKFIMRQAINHLLGGREIKARSLYGPA
CCCHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA