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The map label for this gene is cph2 [H]

Identifier: 52841115

GI number: 52841115

Start: 953282

End: 954424

Strand: Direct

Name: cph2 [H]

Synonym: lpg0879

Alternate gene names: 52841115

Gene position: 953282-954424 (Clockwise)

Preceding gene: 52841108

Following gene: 52841117

Centisome position: 28.06

GC content: 33.07

Gene sequence:

>1143_bases
TTGGATAAGATGACTTCCTCCAAGCATTACAAGGAAAGTATGACCTTGCTATTTGAGGGATCTCTAAGAGCGATTCCGTT
CAATATTATATTGGCTACATTGCTTGCCCTTGACCTTGTTTATAGTGATGTGCCTGCATTAATAATAGGGGCATGGTTTT
TCGGTATTGTCTTTATAAGCTTGGTAAGAAGTTATTTCTGCTGGAAAATAATTAAGAGGGGAGTAGAAAAAAATAGAATT
CAAGCCACTTTGATCGAGTTTTTCCTTCTTACATTTGTTACGGGCAGTATATGGGGCGCATGTTACTTCATTACACTGCC
TTATGTAAATGATCTGCATGAATTTATTATTATTTTAGTGTTTGGTGGAATGTGCGCAGGCGCGATCGCTTCTCTGTCTA
TTTATTTACCAGCTTATTATGCCTATGTTTTTCCAATGCTTTTACCAGTCATTGTTTATAATTATGCCTTGTTAGATGTC
GATAGAACGATGTTAGCAACCATGTTTCTAATATTTATTGCCATGCTTATTATTTCTGCAAAGATTAATCATAGATTGCT
CAATGAAAATTTTCGATTATTCAATGAAAAAGAACTATTAATCAATGAATTGAAAGTAATGTCAATCACTGATTCTTTGT
CGGGGTTATATAACAGGAGATATTTTGACAACATATTTCCACAAGAGTTTAATCGAGCAAGACGCAATCAATATTTTTTA
AGCCTGGTATCAATAGACATAGATAATTTTAAATTAATCAATGATAATTTGGGGCATCCTTTTGGCGATAAAGTCCTGAT
TAGCATCGCTGATTTATTAAAAAAAATATTTCGACGTTCAAACGATATACTGTTTCGGCTTGGCGGAGACGAATTTGCAA
TAATCATCGCTAATCAGCCGATTAAAGAAACAATATCTATTTGTGAAACAATTAAAAATCCTTTTAAAACAGAAAACTTG
AATCATACTTATGACTCAAACGAGCAATTATTCATGAGTCATGTCACTTTAAGCATAGGGATTGTTTATATTCATTTTGA
AAGTTCAGCCAGTATAGAGCATGCAATTACTGCGGCAGATAAGGCATTATATCAAGCTAAAAAAAAAGGAAAAAACCAAA
TTGTAGTAAAAAAGCTACTTTAA

Upstream 100 bases:

>100_bases
CATTAATAAGGATAAAAAATTTTGAATAGGTTTATACAAAAGTGTTCTTTAATTAGCCGGTGTTCTATAATTAAAAGGAA
TGGATATCAATTAATGGACA

Downstream 100 bases:

>100_bases
GAAGATGACATTCTATCTTTAACTGAGATGGCGCCTGGAAGCTGCGTCCTAGTTTAATGGATTATAAGTTGACAGTAAAT
CCTAATAAAATTCCATGTAA

Product: two component response regulator protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MDKMTSSKHYKESMTLLFEGSLRAIPFNIILATLLALDLVYSDVPALIIGAWFFGIVFISLVRSYFCWKIIKRGVEKNRI
QATLIEFFLLTFVTGSIWGACYFITLPYVNDLHEFIIILVFGGMCAGAIASLSIYLPAYYAYVFPMLLPVIVYNYALLDV
DRTMLATMFLIFIAMLIISAKINHRLLNENFRLFNEKELLINELKVMSITDSLSGLYNRRYFDNIFPQEFNRARRNQYFL
SLVSIDIDNFKLINDNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKETISICETIKNPFKTENL
NHTYDSNEQLFMSHVTLSIGIVYIHFESSASIEHAITAADKALYQAKKKGKNQIVVKKLL

Sequences:

>Translated_380_residues
MDKMTSSKHYKESMTLLFEGSLRAIPFNIILATLLALDLVYSDVPALIIGAWFFGIVFISLVRSYFCWKIIKRGVEKNRI
QATLIEFFLLTFVTGSIWGACYFITLPYVNDLHEFIIILVFGGMCAGAIASLSIYLPAYYAYVFPMLLPVIVYNYALLDV
DRTMLATMFLIFIAMLIISAKINHRLLNENFRLFNEKELLINELKVMSITDSLSGLYNRRYFDNIFPQEFNRARRNQYFL
SLVSIDIDNFKLINDNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKETISICETIKNPFKTENL
NHTYDSNEQLFMSHVTLSIGIVYIHFESSASIEHAITAADKALYQAKKKGKNQIVVKKLL
>Mature_380_residues
MDKMTSSKHYKESMTLLFEGSLRAIPFNIILATLLALDLVYSDVPALIIGAWFFGIVFISLVRSYFCWKIIKRGVEKNRI
QATLIEFFLLTFVTGSIWGACYFITLPYVNDLHEFIIILVFGGMCAGAIASLSIYLPAYYAYVFPMLLPVIVYNYALLDV
DRTMLATMFLIFIAMLIISAKINHRLLNENFRLFNEKELLINELKVMSITDSLSGLYNRRYFDNIFPQEFNRARRNQYFL
SLVSIDIDNFKLINDNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKETISICETIKNPFKTENL
NHTYDSNEQLFMSHVTLSIGIVYIHFESSASIEHAITAADKALYQAKKKGKNQIVVKKLL

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=35.7954545454545, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787262, Length=171, Percent_Identity=32.7485380116959, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI145693134, Length=168, Percent_Identity=34.5238095238095, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI87081881, Length=182, Percent_Identity=32.967032967033, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788085, Length=225, Percent_Identity=31.1111111111111, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87081977, Length=181, Percent_Identity=35.3591160220994, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082007, Length=221, Percent_Identity=27.1493212669683, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1787816, Length=176, Percent_Identity=31.25, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787541, Length=187, Percent_Identity=29.9465240641711, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1788956, Length=180, Percent_Identity=35, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1787056, Length=164, Percent_Identity=30.4878048780488, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788381, Length=185, Percent_Identity=28.6486486486486, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87081974, Length=207, Percent_Identity=27.0531400966184, Blast_Score=72, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 43565; Mature: 43565

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKMTSSKHYKESMTLLFEGSLRAIPFNIILATLLALDLVYSDVPALIIGAWFFGIVFIS
CCCCCCCHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
LVRSYFCWKIIKRGVEKNRIQATLIEFFLLTFVTGSIWGACYFITLPYVNDLHEFIIILV
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHH
FGGMCAGAIASLSIYLPAYYAYVFPMLLPVIVYNYALLDVDRTMLATMFLIFIAMLIISA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KINHRLLNENFRLFNEKELLINELKVMSITDSLSGLYNRRYFDNIFPQEFNRARRNQYFL
HHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
SLVSIDIDNFKLINDNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQP
HEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCC
IKETISICETIKNPFKTENLNHTYDSNEQLFMSHVTLSIGIVYIHFESSASIEHAITAAD
HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHEEEEEEEEEEECCCCCHHHHHHHHH
KALYQAKKKGKNQIVVKKLL
HHHHHHHHCCCCEEEHEECC
>Mature Secondary Structure
MDKMTSSKHYKESMTLLFEGSLRAIPFNIILATLLALDLVYSDVPALIIGAWFFGIVFIS
CCCCCCCHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
LVRSYFCWKIIKRGVEKNRIQATLIEFFLLTFVTGSIWGACYFITLPYVNDLHEFIIILV
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHH
FGGMCAGAIASLSIYLPAYYAYVFPMLLPVIVYNYALLDVDRTMLATMFLIFIAMLIISA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KINHRLLNENFRLFNEKELLINELKVMSITDSLSGLYNRRYFDNIFPQEFNRARRNQYFL
HHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
SLVSIDIDNFKLINDNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQP
HEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCC
IKETISICETIKNPFKTENLNHTYDSNEQLFMSHVTLSIGIVYIHFESSASIEHAITAAD
HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHEEEEEEEEEEECCCCCHHHHHHHHH
KALYQAKKKGKNQIVVKKLL
HHHHHHHHCCCCEEEHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]