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The map label for this gene is yagA [C]

Identifier: 52841032

GI number: 52841032

Start: 869667

End: 870320

Strand: Direct

Name: yagA [C]

Synonym: lpg0795

Alternate gene names: 52841032

Gene position: 869667-870320 (Clockwise)

Preceding gene: 52841031

Following gene: 52841033

Centisome position: 25.6

GC content: 40.06

Gene sequence:

>654_bases
CTGCCCCCCTTGAGTGTACCAGCATCCATTAATCAGTGTTGGCCTATGGATTTTATGTGTGATGCGTTGATGTGTGGCCG
ACGTTTCAGAACATTTAACATAGTAGATGATTTTAACCGTGAAGTGTTGGCTATCGAAATCGATTTAAGCCTGCCTGCGC
AAGGAGTAATTCGCGTATTAGAACGCGTTGTTGCATGGCGAGGTTTCCCTGCTAAATTACGCATAGATAATGGTCCTGAA
TTTATCTCAAGCACATTAGCAGACTGGGCTGAAAAGCATCAAGTGGTTTTAGAGTTTATTAAGCCAGGTAAACCAACGCA
AAATTCATTTATTGAGCGATTCAATAGAACTTACCGCACAGAGATATTGGATATGTACGCGTTTAAAAATCTACAAGAAG
TCAGAGAGCTGACAGAAATCTGGATAAAGGAGTACAACGACGAGAGACCGCACGATTCGCTAAATGATTTAACACCGTGG
GAATATCTGGCAAAAAATAAGGCAATGAACTCTAATTTAGGTTGCCACTATATATGGGTGGTACAAGTTACAAACCTTGC
GTTTTTAAATATGAATTTACCTCATTCCCCTTCCTGTCTTCATTTTGTAGCAACAATTAATTTGAGGCAATTCGGGGAAA
CCTATCAAAATTGA

Upstream 100 bases:

>100_bases
CAGGGTCATAAGTGGAATCATAAACGCATTTATCGGGTATATTGTGAACTGAAGCTCAATATGCGTCGTAAAGGCAAAAA
ACGGCTTCCTAATCGCTCAC

Downstream 100 bases:

>100_bases
GTATTTAATGTTCACTTAATGTAAATTTGCTAAAATGTTTGTCAAAAATATACCATTTCGAGAGAAAATGAAGCTGATGA
ACTTAATACATATATTTTAA

Product: ISI400 transposase B

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MPPLSVPASINQCWPMDFMCDALMCGRRFRTFNIVDDFNREVLAIEIDLSLPAQGVIRVLERVVAWRGFPAKLRIDNGPE
FISSTLADWAEKHQVVLEFIKPGKPTQNSFIERFNRTYRTEILDMYAFKNLQEVRELTEIWIKEYNDERPHDSLNDLTPW
EYLAKNKAMNSNLGCHYIWVVQVTNLAFLNMNLPHSPSCLHFVATINLRQFGETYQN

Sequences:

>Translated_217_residues
MPPLSVPASINQCWPMDFMCDALMCGRRFRTFNIVDDFNREVLAIEIDLSLPAQGVIRVLERVVAWRGFPAKLRIDNGPE
FISSTLADWAEKHQVVLEFIKPGKPTQNSFIERFNRTYRTEILDMYAFKNLQEVRELTEIWIKEYNDERPHDSLNDLTPW
EYLAKNKAMNSNLGCHYIWVVQVTNLAFLNMNLPHSPSCLHFVATINLRQFGETYQN
>Mature_216_residues
PPLSVPASINQCWPMDFMCDALMCGRRFRTFNIVDDFNREVLAIEIDLSLPAQGVIRVLERVVAWRGFPAKLRIDNGPEF
ISSTLADWAEKHQVVLEFIKPGKPTQNSFIERFNRTYRTEILDMYAFKNLQEVRELTEIWIKEYNDERPHDSLNDLTPWE
YLAKNKAMNSNLGCHYIWVVQVTNLAFLNMNLPHSPSCLHFVATINLRQFGETYQN

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 25343; Mature: 25212

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPLSVPASINQCWPMDFMCDALMCGRRFRTFNIVDDFNREVLAIEIDLSLPAQGVIRVL
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECHHHCCCCEEEEEEEECCCCHHHHHHHH
ERVVAWRGFPAKLRIDNGPEFISSTLADWAEKHQVVLEFIKPGKPTQNSFIERFNRTYRT
HHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
EILDMYAFKNLQEVRELTEIWIKEYNDERPHDSLNDLTPWEYLAKNKAMNSNLGCHYIWV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEE
VQVTNLAFLNMNLPHSPSCLHFVATINLRQFGETYQN
EEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PPLSVPASINQCWPMDFMCDALMCGRRFRTFNIVDDFNREVLAIEIDLSLPAQGVIRVL
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECHHHCCCCEEEEEEEECCCCHHHHHHHH
ERVVAWRGFPAKLRIDNGPEFISSTLADWAEKHQVVLEFIKPGKPTQNSFIERFNRTYRT
HHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
EILDMYAFKNLQEVRELTEIWIKEYNDERPHDSLNDLTPWEYLAKNKAMNSNLGCHYIWV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEE
VQVTNLAFLNMNLPHSPSCLHFVATINLRQFGETYQN
EEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]