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The map label for this gene is csrA-2

Identifier: 52841018

GI number: 52841018

Start: 854762

End: 855010

Strand: Direct

Name: csrA-2

Synonym: lpg0781

Alternate gene names: 52841018

Gene position: 854762-855010 (Clockwise)

Preceding gene: 52841017

Following gene: 52841022

Centisome position: 25.16

GC content: 35.34

Gene sequence:

>249_bases
ATGGAAGCGTTCTATGGAGAAGTAGGTAGCTGCTATGTTAGGGAGATTTTAGTCATGTTGATTTTGACTCGGCGTATAGG
TGAAACATTAATCATAGGTGATGATGTCAATATTACTGTTTTAGGTGTAAAAGGCAATCAAGTTCGCTTAGGAATTAATG
CTCCAAAAGATGTTTCTGTTCATCGTGAAGAAATTTATTTACGCATACAACAAGAAAAAGAATCTGATGATTCGGAACAA
GCAGTATAA

Upstream 100 bases:

>100_bases
ATCTATGACTTAATATTCCGTTAATAATCAGAGTGTACAATGTGATCCAAGCAATAAATTTTGCTTAAATTTTGTTCATA
TTGTAGTTGCCAAGAACACC

Downstream 100 bases:

>100_bases
ATCGATTTCCACGCAGCTCATCCGGTTCCGAGTACTTAAAAATACTCGGGACGCACTATGTAACTAAATGTAATTTCCTC
TTTAATAAAGCTTCTTATAC

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 82; Mature: 82

Protein sequence:

>82_residues
MEAFYGEVGSCYVREILVMLILTRRIGETLIIGDDVNITVLGVKGNQVRLGINAPKDVSVHREEIYLRIQQEKESDDSEQ
AV

Sequences:

>Translated_82_residues
MEAFYGEVGSCYVREILVMLILTRRIGETLIIGDDVNITVLGVKGNQVRLGINAPKDVSVHREEIYLRIQQEKESDDSEQ
AV
>Mature_82_residues
MEAFYGEVGSCYVREILVMLILTRRIGETLIIGDDVNITVLGVKGNQVRLGINAPKDVSVHREEIYLRIQQEKESDDSEQ
AV

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding [H]

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family [H]

Homologues:

Organism=Escherichia coli, GI1789047, Length=60, Percent_Identity=76.6666666666667, Blast_Score=99, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003751
- ProDom:   PD009007 [H]

Pfam domain/function: PF02599 CsrA [H]

EC number: NA

Molecular weight: Translated: 9235; Mature: 9235

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAFYGEVGSCYVREILVMLILTRRIGETLIIGDDVNITVLGVKGNQVRLGINAPKDVSV
CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCEEEECCCCCCCCCE
HREEIYLRIQQEKESDDSEQAV
EEEEEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MEAFYGEVGSCYVREILVMLILTRRIGETLIIGDDVNITVLGVKGNQVRLGINAPKDVSV
CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCEEEECCCCCCCCCE
HREEIYLRIQQEKESDDSEQAV
EEEEEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA