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The map label for this gene is rbn [C]

Identifier: 52840880

GI number: 52840880

Start: 682215

End: 683453

Strand: Reverse

Name: rbn [C]

Synonym: lpg0643

Alternate gene names: 52840880

Gene position: 683453-682215 (Counterclockwise)

Preceding gene: 52840891

Following gene: 52840871

Centisome position: 20.11

GC content: 40.52

Gene sequence:

>1239_bases
ATGAATTGGAAAGATAAAGTAAAAACTACATTCTACTCCTGCGATCGCTTTGTTCGGTTTGTTATCCAACATTTCATACA
GGATGATTGTACCTATATTGCTTCGGCATTAGCCTTTACAAGCTTACTGGCAGTCGTGCCATTGATGTCTGTGGGTTTGG
CAATATTTTCTTCATTTCCAGTATTCCAAGGTTTGGCGGAGCCGGTACAGAATTTTATTTTTGACAATTTCGTTCCGGCC
ACAGGTAAAATTGTGCAAAGCTATTTACAGCAGTTTACCTCTCAAGTATCAAAACTCTCAATTTGGGGTATAGTCTTTCT
AATTTTTACTGCGTTATTGGTCATGTTCACTATTGAACGAGCAATGAATAAAATCTGGAGAGTGAGTTCATCTCGGCATG
GTGTTTCTGCCTTTTTACTCTATTGGGCTATCATTTCTCTTGCCCCGGTTTTATTAGGTTTGAGCCTGGCAGCAAGCTCC
TATTTATTCTCCATGCCAATATTGGCAGATCATCGAGCTCCTTACACTATTCTTCACTATTCCCCTTTTTTTCTTTCACT
AATCGGTTTTACCTTTTTGTACGTGGTGGTTCCCAATTGCCCTGTCAAAATCCGTCATGCTTTTTGGGGTGGCTTGGTTG
CCGCAATCCTGTTTGAATCAGCTAAGCATGCATTTGCATATTACCTGATACGCTACAATACCTATGCGTTGTTGTATGGG
GCATTTGCCACAGTACCTATATTTTTCATTTGGGTTTATTGGGTATGGATTATTACCTTGTTGGGCGCTGAAATCAGTTA
TGCCTTTTCAGTGCATCATCAGCGTCGTGGAGGGAAGTCCCTCGATGGCTTTTCACATGCATTGCTCTGGTTACACCAGT
TATGGTTAGCGCAACAGCATGGAAAAGGATTAAGCTTTAATGATCTGGTGGATGCCAGCAAACAACCTTTCGCTGTGGAT
GTAGATGAAATGATCAATGCTCTGATTTATCATGAACTGATCCATGCTACCGCTGATGGGCATTACATGTTAAGCCGTGA
TCTCAGCCACGTTACTCTTTATGATTTAACTCAATTATTACCTTATCGCTTGCCAACTCATCTGGAGCTACAATATTCCA
AAGCCTCTCTGGCGGAACAATGGAGAGCCGCCTTTAAAAGACATAATGAAGAATTGAAAAAATCCCTGGATATTAATTTG
GAAGAATTATTCAAGAAAACAGGAACAGTAATCAAATAG

Upstream 100 bases:

>100_bases
ACTTTTTTAACAAAAAGATTGGAGTTTTACATAACTCCTGACTATACAAAAACGAGCATAAAACGATATAGTTATACAAT
AAAAATCTTCTATTTAATCC

Downstream 100 bases:

>100_bases
TGTCATATATCGAATGTGGAACAATAATAAAAACAAGGTAAAAGGACTATTTCAAGTTGAATTGTGGTTCTGGAGAATCA
CACCTCTGAGCTATAATTTG

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MNWKDKVKTTFYSCDRFVRFVIQHFIQDDCTYIASALAFTSLLAVVPLMSVGLAIFSSFPVFQGLAEPVQNFIFDNFVPA
TGKIVQSYLQQFTSQVSKLSIWGIVFLIFTALLVMFTIERAMNKIWRVSSSRHGVSAFLLYWAIISLAPVLLGLSLAASS
YLFSMPILADHRAPYTILHYSPFFLSLIGFTFLYVVVPNCPVKIRHAFWGGLVAAILFESAKHAFAYYLIRYNTYALLYG
AFATVPIFFIWVYWVWIITLLGAEISYAFSVHHQRRGGKSLDGFSHALLWLHQLWLAQQHGKGLSFNDLVDASKQPFAVD
VDEMINALIYHELIHATADGHYMLSRDLSHVTLYDLTQLLPYRLPTHLELQYSKASLAEQWRAAFKRHNEELKKSLDINL
EELFKKTGTVIK

Sequences:

>Translated_412_residues
MNWKDKVKTTFYSCDRFVRFVIQHFIQDDCTYIASALAFTSLLAVVPLMSVGLAIFSSFPVFQGLAEPVQNFIFDNFVPA
TGKIVQSYLQQFTSQVSKLSIWGIVFLIFTALLVMFTIERAMNKIWRVSSSRHGVSAFLLYWAIISLAPVLLGLSLAASS
YLFSMPILADHRAPYTILHYSPFFLSLIGFTFLYVVVPNCPVKIRHAFWGGLVAAILFESAKHAFAYYLIRYNTYALLYG
AFATVPIFFIWVYWVWIITLLGAEISYAFSVHHQRRGGKSLDGFSHALLWLHQLWLAQQHGKGLSFNDLVDASKQPFAVD
VDEMINALIYHELIHATADGHYMLSRDLSHVTLYDLTQLLPYRLPTHLELQYSKASLAEQWRAAFKRHNEELKKSLDINL
EELFKKTGTVIK
>Mature_412_residues
MNWKDKVKTTFYSCDRFVRFVIQHFIQDDCTYIASALAFTSLLAVVPLMSVGLAIFSSFPVFQGLAEPVQNFIFDNFVPA
TGKIVQSYLQQFTSQVSKLSIWGIVFLIFTALLVMFTIERAMNKIWRVSSSRHGVSAFLLYWAIISLAPVLLGLSLAASS
YLFSMPILADHRAPYTILHYSPFFLSLIGFTFLYVVVPNCPVKIRHAFWGGLVAAILFESAKHAFAYYLIRYNTYALLYG
AFATVPIFFIWVYWVWIITLLGAEISYAFSVHHQRRGGKSLDGFSHALLWLHQLWLAQQHGKGLSFNDLVDASKQPFAVD
VDEMINALIYHELIHATADGHYMLSRDLSHVTLYDLTQLLPYRLPTHLELQYSKASLAEQWRAAFKRHNEELKKSLDINL
EELFKKTGTVIK

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=274, Percent_Identity=40.1459854014599, Blast_Score=215, Evalue=4e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 47068; Mature: 47068

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC
>Mature Secondary Structure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HHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA