| Definition | Legionella pneumophila subsp. pneumophila str. Philadelphia 1 chromosome, complete genome. |
|---|---|
| Accession | NC_002942 |
| Length | 3,397,754 |
Click here to switch to the map view.
The map label for this gene is ycaI [H]
Identifier: 52840863
GI number: 52840863
Start: 660200
End: 662407
Strand: Reverse
Name: ycaI [H]
Synonym: lpg0626
Alternate gene names: 52840863
Gene position: 662407-660200 (Counterclockwise)
Preceding gene: 52840864
Following gene: 52840860
Centisome position: 19.5
GC content: 40.35
Gene sequence:
>2208_bases ATGGAAATTTTTTGCTTTTTAATAGGCGTACTTTATGCCTATACCTATAATATTTATCTAACTATTGCGATTCCTTTACT CTTTTATATCACACCAAGATATCCCATTGTCCTGTTCTTCATTGCCGGGTGTGGCTTTGCCCTGATTCATCAGTGGATTG TATCTCCCAAGGGCATGCCTGATACGCAAGTAATCACACAAGCCCAATTGGAAGGAACAATTGCTTCCATCCCGATGCAA CATCCTAACAAAACCCAATTCCATTTTGCAATTGAAAAAATTAATAATAACCCTGCTCAAGGCTTGATCCAATTAAACTG GTATAACAAACCACCTGTCTTACGAGCCGGTCAGCGATGGCAACTTTCAGTGAAACTAAAAAAACCTCGTAACTTCCACA ACCCGGGAGGTTTTAATTATGTACGTTACCTGGCGGCTCGTCATATCCATTGGACTGGCTATATTCGTTATCGGAATAAT AAGCTAATTAGCAATCAACCCCCTTCTTTCAGTTGGTTAGCACTACGTGAAAAAATAGGGGATGCTTTGACAAAACTGGC GCCGGATACAGAAACGGCAGGCATCATCGAAGCATTGACGTTAAATGTTACTCACCATATCAGTTCAGATCATTGGAATT TGTTCCGAAGAACAGGAACGATACATTTATTCGGGATTTCAGGAGAGCACATCGCTCTGGTCTCTGGCATTTTCTTTATA GTAATGAGATGGATTTGGTCAATAAATTATCGATGCTGTTTGTTCTTACCGGCCAATACCATAGCGAGTATCGGTGGGCT ACTGGCCGCCTTGCCCTATGCTTTTTTAGCCGGGTTTGAGCCTCCTGTGCAACGTGCTTTAATTGGTTGTGTACTTTACA CAATATACGCCATAGGAAAACAACGTTTTACACCATGGCAAATATGGAGATATGCCTTATTTTTAGTCTTGTGTATTGAG CCCCATGCCGTATTCCTGCAAGGTTTTTACTTTTCATTTCTTGCCGTGGCCTGTCTTCTATTGACTCATCAACGCTGGCC ACTGAAAAATTATAAAAAAACACTGGCATTACAATTAAGCTGCCTCATTGGATTAATGCCCTTGACTCTCCATTGGTATT CCTATGGTTCTATCAATGGATTTCTTGCCAATTTATTCGCCATACCTTTAGTCAGTTTTCTGATAGTACCCTTGGCTTTA ATGACCATGATAACGAGTCCATTTCATTGGTCCTGGATATTGATGAAACCATTGGCGTGGCTTGTTGCCCTGTTACTGCA AGGACTAACGTATGTTGAGCAAATAGCAGGGATCAATATCACCTGGTCCATCACCTCGGTAACAATGATGCTCGCTATGA CAGCAGGTCTGTTTTTAAGGGTATTATTACCTGTCAAGCCATTCAAACACTTGGCTATCCTTTGGATTATCCTTCCCTTA TTTCCACCTCGTACTGCAATTTATCCCGGGGAAGCATTAATTAATATTTTGGATGTTGGGCAAGGACTTGCCGTTGCGAT ACAAACGCAACATCATGTTTTACTCTACGACACGGGAGATTCCTACTTTCAGGGGAGTGATTTAGGGCAAATGGCGATAA TCCCCTTTTTCAGGTCAATTGGAATAAAAACAATTGACAAAATAGTAATAAGCCATCCCGATAAAGATCATAAAGGCGGA TTAAATTCCCTTGAAAAAGAGATGAAAGTCAATCAATTAATAGTGAATGATCCCTATTTTTATAAACGTGGAAGTAATTG TCATTCATACCCGCAATGGCAATGGGATGGGGTGAGTTTTCGTTTTTTACCCATCAGGGAATCTTTCAATAAAAAAAATA ACAATTCTTGTATCTTACAGGTAAGTAATTCGGCTGGCAGGGTTTTGTTAACGGGAGATATTGAAAAAGCAGCTGAAGAG TACCTGGTAAGAAACTACGGCAGTCAGCTGGCATCCGAAATTTTAGTTGTGCCTCATCATGGGAGCAAAACGTCTTCATC CTATCGATTTTTGCTGGAAGTAAACCCGCTTTATGCCATTGCATCCTTAGGATTTGATAATCGCTTCAAATTTCCACATT CTAAAACTTTGCAAAGCATGAAAACATTAGGTATCACTTTTTTTAGAACAGACGAATGCGGAATGGCAGCAATCAAACTA CCTGCGTCAGGTAAAATTAACAAACCAACCTGTATGCAGGCTGTATAA
Upstream 100 bases:
>100_bases CAGAATGCTGGAATCCCGGTTAATACTGTAAAAAATTCTTTACACAAAGGATTCAATTCGAGTAGATTTGCCAGTAAGGG AAAGTCCAACTTAATTTGAA
Downstream 100 bases:
>100_bases ATGGATTGGCTGACCCATGTTATATCTAAGCCTTATTAGCCGATTGGAACCACCAGTCACTCAATGGCGTATTATTGTAA TACTTTAAATGTTCCGTAAA
Product: DNA uptake/competence protein ComA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 735; Mature: 735
Protein sequence:
>735_residues MEIFCFLIGVLYAYTYNIYLTIAIPLLFYITPRYPIVLFFIAGCGFALIHQWIVSPKGMPDTQVITQAQLEGTIASIPMQ HPNKTQFHFAIEKINNNPAQGLIQLNWYNKPPVLRAGQRWQLSVKLKKPRNFHNPGGFNYVRYLAARHIHWTGYIRYRNN KLISNQPPSFSWLALREKIGDALTKLAPDTETAGIIEALTLNVTHHISSDHWNLFRRTGTIHLFGISGEHIALVSGIFFI VMRWIWSINYRCCLFLPANTIASIGGLLAALPYAFLAGFEPPVQRALIGCVLYTIYAIGKQRFTPWQIWRYALFLVLCIE PHAVFLQGFYFSFLAVACLLLTHQRWPLKNYKKTLALQLSCLIGLMPLTLHWYSYGSINGFLANLFAIPLVSFLIVPLAL MTMITSPFHWSWILMKPLAWLVALLLQGLTYVEQIAGINITWSITSVTMMLAMTAGLFLRVLLPVKPFKHLAILWIILPL FPPRTAIYPGEALINILDVGQGLAVAIQTQHHVLLYDTGDSYFQGSDLGQMAIIPFFRSIGIKTIDKIVISHPDKDHKGG LNSLEKEMKVNQLIVNDPYFYKRGSNCHSYPQWQWDGVSFRFLPIRESFNKKNNNSCILQVSNSAGRVLLTGDIEKAAEE YLVRNYGSQLASEILVVPHHGSKTSSSYRFLLEVNPLYAIASLGFDNRFKFPHSKTLQSMKTLGITFFRTDECGMAAIKL PASGKINKPTCMQAV
Sequences:
>Translated_735_residues MEIFCFLIGVLYAYTYNIYLTIAIPLLFYITPRYPIVLFFIAGCGFALIHQWIVSPKGMPDTQVITQAQLEGTIASIPMQ HPNKTQFHFAIEKINNNPAQGLIQLNWYNKPPVLRAGQRWQLSVKLKKPRNFHNPGGFNYVRYLAARHIHWTGYIRYRNN KLISNQPPSFSWLALREKIGDALTKLAPDTETAGIIEALTLNVTHHISSDHWNLFRRTGTIHLFGISGEHIALVSGIFFI VMRWIWSINYRCCLFLPANTIASIGGLLAALPYAFLAGFEPPVQRALIGCVLYTIYAIGKQRFTPWQIWRYALFLVLCIE PHAVFLQGFYFSFLAVACLLLTHQRWPLKNYKKTLALQLSCLIGLMPLTLHWYSYGSINGFLANLFAIPLVSFLIVPLAL MTMITSPFHWSWILMKPLAWLVALLLQGLTYVEQIAGINITWSITSVTMMLAMTAGLFLRVLLPVKPFKHLAILWIILPL FPPRTAIYPGEALINILDVGQGLAVAIQTQHHVLLYDTGDSYFQGSDLGQMAIIPFFRSIGIKTIDKIVISHPDKDHKGG LNSLEKEMKVNQLIVNDPYFYKRGSNCHSYPQWQWDGVSFRFLPIRESFNKKNNNSCILQVSNSAGRVLLTGDIEKAAEE YLVRNYGSQLASEILVVPHHGSKTSSSYRFLLEVNPLYAIASLGFDNRFKFPHSKTLQSMKTLGITFFRTDECGMAAIKL PASGKINKPTCMQAV >Mature_735_residues MEIFCFLIGVLYAYTYNIYLTIAIPLLFYITPRYPIVLFFIAGCGFALIHQWIVSPKGMPDTQVITQAQLEGTIASIPMQ HPNKTQFHFAIEKINNNPAQGLIQLNWYNKPPVLRAGQRWQLSVKLKKPRNFHNPGGFNYVRYLAARHIHWTGYIRYRNN KLISNQPPSFSWLALREKIGDALTKLAPDTETAGIIEALTLNVTHHISSDHWNLFRRTGTIHLFGISGEHIALVSGIFFI VMRWIWSINYRCCLFLPANTIASIGGLLAALPYAFLAGFEPPVQRALIGCVLYTIYAIGKQRFTPWQIWRYALFLVLCIE PHAVFLQGFYFSFLAVACLLLTHQRWPLKNYKKTLALQLSCLIGLMPLTLHWYSYGSINGFLANLFAIPLVSFLIVPLAL MTMITSPFHWSWILMKPLAWLVALLLQGLTYVEQIAGINITWSITSVTMMLAMTAGLFLRVLLPVKPFKHLAILWIILPL FPPRTAIYPGEALINILDVGQGLAVAIQTQHHVLLYDTGDSYFQGSDLGQMAIIPFFRSIGIKTIDKIVISHPDKDHKGG LNSLEKEMKVNQLIVNDPYFYKRGSNCHSYPQWQWDGVSFRFLPIRESFNKKNNNSCILQVSNSAGRVLLTGDIEKAAEE YLVRNYGSQLASEILVVPHHGSKTSSSYRFLLEVNPLYAIASLGFDNRFKFPHSKTLQSMKTLGITFFRTDECGMAAIKL PASGKINKPTCMQAV
Specific function: Unknown
COG id: COG2333
COG function: function code R; Predicted hydrolase (metallo-beta-lactamase superfamily)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis ComEC, N.gonorrhoeae ComA, and H.influenzae Rec2 [H]
Homologues:
Organism=Escherichia coli, GI87081801, Length=660, Percent_Identity=30.1515151515152, Blast_Score=250, Evalue=2e-67,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 83237; Mature: 83237
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEIFCFLIGVLYAYTYNIYLTIAIPLLFYITPRYPIVLFFIAGCGFALIHQWIVSPKGMP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHCCCCCCC DTQVITQAQLEGTIASIPMQHPNKTQFHFAIEKINNNPAQGLIQLNWYNKPPVLRAGQRW CHHHHHHHHHCCHHEECCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCEE QLSVKLKKPRNFHNPGGFNYVRYLAARHIHWTGYIRYRNNKLISNQPPSFSWLALREKIG EEEEEEECCCCCCCCCCHHHHHHHHHHCEEEEEEEEEECCEEECCCCCCCHHHHHHHHHH DALTKLAPDTETAGIIEALTLNVTHHISSDHWNLFRRTGTIHLFGISGEHIALVSGIFFI HHHHHCCCCCCCCHHHHHEEEEEEECCCCCHHHHHEECCEEEEEECCCCHHHHHHHHHHH VMRWIWSINYRCCLFLPANTIASIGGLLAALPYAFLAGFEPPVQRALIGCVLYTIYAIGK HHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC QRFTPWQIWRYALFLVLCIEPHAVFLQGFYFSFLAVACLLLTHQRWPLKNYKKTLALQLS CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH CLIGLMPLTLHWYSYGSINGFLANLFAIPLVSFLIVPLALMTMITSPFHWSWILMKPLAW HHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH LVALLLQGLTYVEQIAGINITWSITSVTMMLAMTAGLFLRVLLPVKPFKHLAILWIILPL HHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC FPPRTAIYPGEALINILDVGQGLAVAIQTQHHVLLYDTGDSYFQGSDLGQMAIIPFFRSI CCCCCCCCCCHHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHC GIKTIDKIVISHPDKDHKGGLNSLEKEMKVNQLIVNDPYFYKRGSNCHSYPQWQWDGVSF CHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCEEEECCCEEEECCCCCCCCCCEEECCEEE RFLPIRESFNKKNNNSCILQVSNSAGRVLLTGDIEKAAEEYLVRNYGSQLASEILVVPHH EEEECHHHCCCCCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCEEEECCC GSKTSSSYRFLLEVNPLYAIASLGFDNRFKFPHSKTLQSMKTLGITFFRTDECGMAAIKL CCCCCCCEEEEEEECCHHEEECCCCCCCCCCCCHHHHHHHHHHCEEEEEECCCCEEEEEC PASGKINKPTCMQAV CCCCCCCCCCCCCCC >Mature Secondary Structure MEIFCFLIGVLYAYTYNIYLTIAIPLLFYITPRYPIVLFFIAGCGFALIHQWIVSPKGMP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHCCCCCCC DTQVITQAQLEGTIASIPMQHPNKTQFHFAIEKINNNPAQGLIQLNWYNKPPVLRAGQRW CHHHHHHHHHCCHHEECCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCEE QLSVKLKKPRNFHNPGGFNYVRYLAARHIHWTGYIRYRNNKLISNQPPSFSWLALREKIG EEEEEEECCCCCCCCCCHHHHHHHHHHCEEEEEEEEEECCEEECCCCCCCHHHHHHHHHH DALTKLAPDTETAGIIEALTLNVTHHISSDHWNLFRRTGTIHLFGISGEHIALVSGIFFI HHHHHCCCCCCCCHHHHHEEEEEEECCCCCHHHHHEECCEEEEEECCCCHHHHHHHHHHH VMRWIWSINYRCCLFLPANTIASIGGLLAALPYAFLAGFEPPVQRALIGCVLYTIYAIGK HHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC QRFTPWQIWRYALFLVLCIEPHAVFLQGFYFSFLAVACLLLTHQRWPLKNYKKTLALQLS CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH CLIGLMPLTLHWYSYGSINGFLANLFAIPLVSFLIVPLALMTMITSPFHWSWILMKPLAW HHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH LVALLLQGLTYVEQIAGINITWSITSVTMMLAMTAGLFLRVLLPVKPFKHLAILWIILPL HHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC FPPRTAIYPGEALINILDVGQGLAVAIQTQHHVLLYDTGDSYFQGSDLGQMAIIPFFRSI CCCCCCCCCCHHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHC GIKTIDKIVISHPDKDHKGGLNSLEKEMKVNQLIVNDPYFYKRGSNCHSYPQWQWDGVSF CHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCEEEECCCEEEECCCCCCCCCCEEECCEEE RFLPIRESFNKKNNNSCILQVSNSAGRVLLTGDIEKAAEEYLVRNYGSQLASEILVVPHH EEEECHHHCCCCCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCEEEECCC GSKTSSSYRFLLEVNPLYAIASLGFDNRFKFPHSKTLQSMKTLGITFFRTDECGMAAIKL CCCCCCCEEEEEEECCHHEEECCCCCCCCCCCCHHHHHHHHHHCEEEEEECCCCEEEEEC PASGKINKPTCMQAV CCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503; 8094880 [H]