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The map label for this gene is icmH

Identifier: 52840704

GI number: 52840704

Start: 500626

End: 501411

Strand: Reverse

Name: icmH

Synonym: lpg0459

Alternate gene names: NA

Gene position: 501411-500626 (Counterclockwise)

Preceding gene: 52840705

Following gene: 52840703

Centisome position: 14.76

GC content: 35.75

Gene sequence:

>786_bases
ATGACAACTGAGCAATACCCGTCCTCACTTGTCAATCGTCTTGCAATCACAGAGCCTGCGTTGGTTCCAAGTGGATATTA
TCGTTCGAAATTATTTATTGCCCCATTTTCTACAAATGTTTTAGTTGCAGCGGCCGGACCAATACTGTCTTTATTGGAAA
GACTTTGTTTAAGTCCTTCTTTACCTCCAGTAGAGGATATAAGAGAAAATATACAGCATGAATTACGCGCCTTTCACAGT
AAATTAGACGCTTCTAAATATCCGTTGGATATTATTAGCATTGCTCAATATTTATTATCAGCTACCATTGATGAAATATT
AGGTAAAAGTTATCTAAGGGTCTATAACCTGACGACAGAGTTCAAATCATTTACTCCCTTATCAAGTGATGGGGCACAAC
CCCAGCAGCGTTTTTTTGAAATATTGAACTACATTAAAGAGAGGCCAAATCAATTTCTCGATTTAATTGAATTGGCCTAC
TTTTGCCTCATTGCCGGATTTGAGGGTGAGTACCATCTGAAAGCAGACGGGCGACAATGTCTTGATAATACTATTGAAGA
TTTATATCAAATCATACAAAAATACCGTTTTAATAAACCACATCGCTTGTTTAATGAGAATCCTCTTCCCAAAACTATTA
AAAAAAATTATAAAGCAACGTGGATAACAACTATTGCTGCTGTAGGTATTGTAATTCTAGCTTTTGTTACTAGCCATGTT
TTATTAGAAAACAAAGCTAAAACTGTTTTATTTGGACATACCCAACTTGCTATGCTGGAAAACTAA

Upstream 100 bases:

>100_bases
TAAGAATTATAGGAATACTTACTAATCAACTAGCAATCACGCAAAAGACAAAAATGCTACTGAAAGTCTAATGCATCACT
GAAACCCATGGAGTAATATA

Downstream 100 bases:

>100_bases
TGGACAATTCATTACGCGCATTATGTGATGCTATAAAAAAAATTCTCTCTCAATTAAAACCACAAACTAATCAATTATCT
TTTGTTGTCATCACCGGAAA

Product: IcmH (DotU)

Products: NA

Alternate protein names: Outer Membrane Protein; Type VI Secretion System Core Protein; OmpA/MotB Domain-Containing Protein; Type VI Secretion System Protein ImpK; OmpA Family Protein; OmpA-Family Protein

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MTTEQYPSSLVNRLAITEPALVPSGYYRSKLFIAPFSTNVLVAAAGPILSLLERLCLSPSLPPVEDIRENIQHELRAFHS
KLDASKYPLDIISIAQYLLSATIDEILGKSYLRVYNLTTEFKSFTPLSSDGAQPQQRFFEILNYIKERPNQFLDLIELAY
FCLIAGFEGEYHLKADGRQCLDNTIEDLYQIIQKYRFNKPHRLFNENPLPKTIKKNYKATWITTIAAVGIVILAFVTSHV
LLENKAKTVLFGHTQLAMLEN

Sequences:

>Translated_261_residues
MTTEQYPSSLVNRLAITEPALVPSGYYRSKLFIAPFSTNVLVAAAGPILSLLERLCLSPSLPPVEDIRENIQHELRAFHS
KLDASKYPLDIISIAQYLLSATIDEILGKSYLRVYNLTTEFKSFTPLSSDGAQPQQRFFEILNYIKERPNQFLDLIELAY
FCLIAGFEGEYHLKADGRQCLDNTIEDLYQIIQKYRFNKPHRLFNENPLPKTIKKNYKATWITTIAAVGIVILAFVTSHV
LLENKAKTVLFGHTQLAMLEN
>Mature_260_residues
TTEQYPSSLVNRLAITEPALVPSGYYRSKLFIAPFSTNVLVAAAGPILSLLERLCLSPSLPPVEDIRENIQHELRAFHSK
LDASKYPLDIISIAQYLLSATIDEILGKSYLRVYNLTTEFKSFTPLSSDGAQPQQRFFEILNYIKERPNQFLDLIELAYF
CLIAGFEGEYHLKADGRQCLDNTIEDLYQIIQKYRFNKPHRLFNENPLPKTIKKNYKATWITTIAAVGIVILAFVTSHVL
LENKAKTVLFGHTQLAMLEN

Specific function: Unknown

COG id: COG3455

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29689; Mature: 29557

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTEQYPSSLVNRLAITEPALVPSGYYRSKLFIAPFSTNVLVAAAGPILSLLERLCLSPS
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHCCCC
LPPVEDIRENIQHELRAFHSKLDASKYPLDIISIAQYLLSATIDEILGKSYLRVYNLTTE
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FKSFTPLSSDGAQPQQRFFEILNYIKERPNQFLDLIELAYFCLIAGFEGEYHLKADGRQC
HHHCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHH
LDNTIEDLYQIIQKYRFNKPHRLFNENPLPKTIKKNYKATWITTIAAVGIVILAFVTSHV
HHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LLENKAKTVLFGHTQLAMLEN
HHHCCCCEEEECCHHHHHCCC
>Mature Secondary Structure 
TTEQYPSSLVNRLAITEPALVPSGYYRSKLFIAPFSTNVLVAAAGPILSLLERLCLSPS
CCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHCCCC
LPPVEDIRENIQHELRAFHSKLDASKYPLDIISIAQYLLSATIDEILGKSYLRVYNLTTE
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FKSFTPLSSDGAQPQQRFFEILNYIKERPNQFLDLIELAYFCLIAGFEGEYHLKADGRQC
HHHCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHH
LDNTIEDLYQIIQKYRFNKPHRLFNENPLPKTIKKNYKATWITTIAAVGIVILAFVTSHV
HHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LLENKAKTVLFGHTQLAMLEN
HHHCCCCEEEECCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA