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The map label for this gene is 52840517

Identifier: 52840517

GI number: 52840517

Start: 309672

End: 310310

Strand: Reverse

Name: 52840517

Synonym: lpg0262

Alternate gene names: NA

Gene position: 310310-309672 (Counterclockwise)

Preceding gene: 52840520

Following gene: 52840516

Centisome position: 9.13

GC content: 40.22

Gene sequence:

>639_bases
ATGTCAGATGTATTGAACAATTACTATCTACAGACTATGGGAATTGAAGTCTGGGTGATGCGTGAGTCCACTCCTTCTTG
TGAAAAGCATTTAGCGGCTTTAGCGGATGAAGTGGCATCCTGTGTACGTTGTTCTCTTCATAAAACACGCACCCAAACTG
TTTTTTCTCGTGGGAATCCAAAAGCAAAACTGATGATTATTGGTGAAGCGCCTGGTTTTTATGAGGATCAGAAAGGACAA
CCTTTTGTGGGAAAGGCTGGGCTTTTATTAAACAAGATGATACGTAGTATTGAAATGACAGAGAATGATATCTACATTGC
CAATGTTTTGAAATGTCGCCCCCCTAATAATCGTGATCCAGCCCTTGAGGAAATTTCTCAATGCAGTTCATTCCTGACTC
GCCAAATTCAACTCATTAAACCACACTTAATCCTTGCGTTAGGACGTTTCGCCGGACAATTCTTACTTGATAAACCACTT
CCTCTGAAGCAGCTGCGTAATCATATTCACTACTATGACAATACTCCTTTTATCGTAAGCTATCACCCTGCCTATCTTTT
GCGCAATCCCTCGGATAAAAAGAAAGCTTATATTGATTGGTTAGCTGTGAAAAATTTTCTGTTGGATTACGGCCAATAA

Upstream 100 bases:

>100_bases
AATAATGTCTTTAACAAAGAGATTGGAGGTGCGTAAGTACCAAGCTACAAAAGGTAAGTCTAATCTATAATCCGGATTTT
ATTAATATCATGAGTTTTTT

Downstream 100 bases:

>100_bases
ACTAGGGCGTGTTGACAATTGGCTCCCAACGCCTACGTGCCGCGACTTGTTCGCGGCATCCAGGAGATGGTCAATTTGAA
ATCGGTCCTTCGAATAGCTG

Product: bacteriophage related DNA polymerase

Products: diphosphate; DNAn+1

Alternate protein names: Uracil-DNA Glycosylase; Phage SPO1 DNA Polymerase-Like Protein; DNA Polymerase; DNA Polymerase Bacteriophage-Type; Uracil DNA Glycosylase Superfamily Protein; DNA-Directed DNA Polymerase; Phage Spo1 DNA Polymerase-Related Protein; DNA Polymerase-Related Protein Bacteriophage-Type; Uracil-DNA Glycosylase Family 4 Protein; DNA Polymerase-Related Protein; DNA Glycosylase; Bacteriophage-Related DNA Polymerase; N-Terminus Of Bacteriophage-Type DNA Polymerase; Phage SPO1 DNA Polymerase Domain-Containing Protein; Uracil-DNA Glycosylase Phage-Related Protein; Uracil-DNA Glycosylase Superfamily Protein; Phage Shock Protein E; DNA Polymerase Domain-Containing Protein; Uracil-DNA Glycosylase-Related Protein; Phage SpO1 DNA Polymerase-Related Protein; Phage DNA Polymerase; C-Terminal Part Of DNA Polymerase Bacteriophage-Type; Phage Spo1 DNA Polymerase Domain Protein; N-Terminus Of Phage SPO1 DNA Polymerase; Uracil-DNA Glycosylase C-Terminal Domain Protein; Arginine Biosynthesis Bifunctional Protein ArgJ; Bacteriophage-Type DNA Polymerase; Uracil-DNA Glycosylase-Like Protein; DNA Polymerase Related Protein; Uracil DNA Glycosylase; Phage DNA Polymerase-Related Protein; DNA-Directed DNA Polymerase Bacteriophage-Type

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MSDVLNNYYLQTMGIEVWVMRESTPSCEKHLAALADEVASCVRCSLHKTRTQTVFSRGNPKAKLMIIGEAPGFYEDQKGQ
PFVGKAGLLLNKMIRSIEMTENDIYIANVLKCRPPNNRDPALEEISQCSSFLTRQIQLIKPHLILALGRFAGQFLLDKPL
PLKQLRNHIHYYDNTPFIVSYHPAYLLRNPSDKKKAYIDWLAVKNFLLDYGQ

Sequences:

>Translated_212_residues
MSDVLNNYYLQTMGIEVWVMRESTPSCEKHLAALADEVASCVRCSLHKTRTQTVFSRGNPKAKLMIIGEAPGFYEDQKGQ
PFVGKAGLLLNKMIRSIEMTENDIYIANVLKCRPPNNRDPALEEISQCSSFLTRQIQLIKPHLILALGRFAGQFLLDKPL
PLKQLRNHIHYYDNTPFIVSYHPAYLLRNPSDKKKAYIDWLAVKNFLLDYGQ
>Mature_211_residues
SDVLNNYYLQTMGIEVWVMRESTPSCEKHLAALADEVASCVRCSLHKTRTQTVFSRGNPKAKLMIIGEAPGFYEDQKGQP
FVGKAGLLLNKMIRSIEMTENDIYIANVLKCRPPNNRDPALEEISQCSSFLTRQIQLIKPHLILALGRFAGQFLLDKPLP
LKQLRNHIHYYDNTPFIVSYHPAYLLRNPSDKKKAYIDWLAVKNFLLDYGQ

Specific function: Unknown

COG id: COG1573

COG function: function code L; Uracil-DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 24259; Mature: 24127

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDVLNNYYLQTMGIEVWVMRESTPSCEKHLAALADEVASCVRCSLHKTRTQTVFSRGNP
CCCHHHHHHHEEECEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KAKLMIIGEAPGFYEDQKGQPFVGKAGLLLNKMIRSIEMTENDIYIANVLKCRPPNNRDP
CEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCH
ALEEISQCSSFLTRQIQLIKPHLILALGRFAGQFLLDKPLPLKQLRNHIHYYDNTPFIVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCEECCCCEEEE
YHPAYLLRNPSDKKKAYIDWLAVKNFLLDYGQ
ECCEEEEECCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SDVLNNYYLQTMGIEVWVMRESTPSCEKHLAALADEVASCVRCSLHKTRTQTVFSRGNP
CCHHHHHHHEEECEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KAKLMIIGEAPGFYEDQKGQPFVGKAGLLLNKMIRSIEMTENDIYIANVLKCRPPNNRDP
CEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCH
ALEEISQCSSFLTRQIQLIKPHLILALGRFAGQFLLDKPLPLKQLRNHIHYYDNTPFIVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCEECCCCEEEE
YHPAYLLRNPSDKKKAYIDWLAVKNFLLDYGQ
ECCEEEEECCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA