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The map label for this gene is arcD [H]

Identifier: 52787842

GI number: 52787842

Start: 3992119

End: 3993525

Strand: Direct

Name: arcD [H]

Synonym: BLi04165

Alternate gene names: 52787842

Gene position: 3992119-3993525 (Clockwise)

Preceding gene: 52787841

Following gene: 52787843

Centisome position: 94.54

GC content: 50.96

Gene sequence:

>1407_bases
ATGGCGGAAGAAAAAAAACTTGGGCTGTTTGCGCTCATCGCGCTTGTCATCGGATCGATGATCGGCGGGGGCGCCTTCAA
CCTTGCAAGCGACATGGCTTCAGGGGCGGGGGCGGGAGCCATTTTAATCGGCTGGATCATCACCGGAGTCGGCATGATTG
CCCTGGCATTCTCTTTCCAAAACTTGACGACGAAAAGGCCTGATTTAGACGGCGGTATTTTCACTTATGCCCGGGAAGGA
TTCGGCCATTTCATGGGCTTTAACAGCGGCTGGGGGTACTGGTTCGCAGCCCTTCTCGGCAATGTCGCATATGGAACGCT
GCTGTTCAGCGCAATCGGATATTTCATCCCTGCGTTTGGAGACGGACAAAACATCGCATCAATTATCGGTGCAAGCGTGA
TCCTCTGGTGCGTGCACTTTTTGATCCTCCGCGGTGTTCAGTCCGCTGCCATGATCAACTTAATTACGACCATTTCAAAA
CTTGTACCGATTTTCGCTTTCATTATCGCCATTATCTTTGTGTTTCATCTTGATTTATTTACGAACGATTTCTGGGGAAA
AGGGCTGTCGCTCGGTTCCATCGGAACACAGGTCAAGAGCACGATGCTGGTGACCGTCTGGGTGTTTACCGGAATTGAAG
GGGCCGTCTTATTTTCAAGCCGGGCCAAGAAATCAAGCGATGTTGGCAAAGCTACTGTCATCGGCTTGATCAGCGTACTC
GTGATTTACGTCATGATTACGATGCTGTCGCTCGGCGTCATGAATCAGCAAAACTTGGCCGAGCTTCCGAATCCTTCAAT
GGCCGCGATCATGGAGCATATCGTCGGCAAATGGGGAGCCGTGCTCATCAACCTGGGATTGATCATTTCCGTATTGGGCG
CCTGGCTGGCCTGGACATTATTCGCGGGCGAACTCCCGCTGATCGCGGCACGCGAAGGGGTCTTCCCGAAATGGTTCGGC
AAAGAAAATAAAAACGGTGCGCCGACAAATGCGCTGACTTTGACAAACGCCATTATCCAGCTGTTTTTGCTGACGTTTCT
CATTTCAGATGCGGCCTACCAGTTTGCATTTTCCTTGGCTTCCTCGGCCATCTTGATCCCGTATCTGTTTTCCGGGCTTT
ATCAGCTTAAATACAGCTGGCTGCACAAAGAGCCTAACCGGGGCAAAAATCTCATCATCGGCATCATCGCAAGCATATAC
GGCGTCTGGCTCGTATATGCCGCGGGACTTGATTACCTGCTTTTGACCATGATTTTATACGCTCCCGGCATTCTCGTATT
CCGGGCTGTGCGCAAAGGAAAAGAAGGCCCAGTCTTCAATAAAGCCGAGCTTTTGATTGCCGCCCTGATTCTTGTATTGG
CCGTGATCGCCGTGATCAGACTGGCTTCGGGAAGCATTTCAATTTAA

Upstream 100 bases:

>100_bases
ACACGATTAAAGCTGTCATGGCAGCGACGCTCGGCGATCTTGACTGACAGGAAAAGGGACTCATTCCCTTTTCCATTCTA
AACCGAATGAGGTGACAAAA

Downstream 100 bases:

>100_bases
CAAAACAGAGGTGATTATTAAATGAAAAAAAGAAAAATTGTCGTCGCACTTGGCGGTAATGCCATTCAAACCGGAGATGC
CAGCGCAGAAGCGCAAAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MAEEKKLGLFALIALVIGSMIGGGAFNLASDMASGAGAGAILIGWIITGVGMIALAFSFQNLTTKRPDLDGGIFTYAREG
FGHFMGFNSGWGYWFAALLGNVAYGTLLFSAIGYFIPAFGDGQNIASIIGASVILWCVHFLILRGVQSAAMINLITTISK
LVPIFAFIIAIIFVFHLDLFTNDFWGKGLSLGSIGTQVKSTMLVTVWVFTGIEGAVLFSSRAKKSSDVGKATVIGLISVL
VIYVMITMLSLGVMNQQNLAELPNPSMAAIMEHIVGKWGAVLINLGLIISVLGAWLAWTLFAGELPLIAAREGVFPKWFG
KENKNGAPTNALTLTNAIIQLFLLTFLISDAAYQFAFSLASSAILIPYLFSGLYQLKYSWLHKEPNRGKNLIIGIIASIY
GVWLVYAAGLDYLLLTMILYAPGILVFRAVRKGKEGPVFNKAELLIAALILVLAVIAVIRLASGSISI

Sequences:

>Translated_468_residues
MAEEKKLGLFALIALVIGSMIGGGAFNLASDMASGAGAGAILIGWIITGVGMIALAFSFQNLTTKRPDLDGGIFTYAREG
FGHFMGFNSGWGYWFAALLGNVAYGTLLFSAIGYFIPAFGDGQNIASIIGASVILWCVHFLILRGVQSAAMINLITTISK
LVPIFAFIIAIIFVFHLDLFTNDFWGKGLSLGSIGTQVKSTMLVTVWVFTGIEGAVLFSSRAKKSSDVGKATVIGLISVL
VIYVMITMLSLGVMNQQNLAELPNPSMAAIMEHIVGKWGAVLINLGLIISVLGAWLAWTLFAGELPLIAAREGVFPKWFG
KENKNGAPTNALTLTNAIIQLFLLTFLISDAAYQFAFSLASSAILIPYLFSGLYQLKYSWLHKEPNRGKNLIIGIIASIY
GVWLVYAAGLDYLLLTMILYAPGILVFRAVRKGKEGPVFNKAELLIAALILVLAVIAVIRLASGSISI
>Mature_467_residues
AEEKKLGLFALIALVIGSMIGGGAFNLASDMASGAGAGAILIGWIITGVGMIALAFSFQNLTTKRPDLDGGIFTYAREGF
GHFMGFNSGWGYWFAALLGNVAYGTLLFSAIGYFIPAFGDGQNIASIIGASVILWCVHFLILRGVQSAAMINLITTISKL
VPIFAFIIAIIFVFHLDLFTNDFWGKGLSLGSIGTQVKSTMLVTVWVFTGIEGAVLFSSRAKKSSDVGKATVIGLISVLV
IYVMITMLSLGVMNQQNLAELPNPSMAAIMEHIVGKWGAVLINLGLIISVLGAWLAWTLFAGELPLIAAREGVFPKWFGK
ENKNGAPTNALTLTNAIIQLFLLTFLISDAAYQFAFSLASSAILIPYLFSGLYQLKYSWLHKEPNRGKNLIIGIIASIYG
VWLVYAAGLDYLLLTMILYAPGILVFRAVRKGKEGPVFNKAELLIAALILVLAVIAVIRLASGSISI

Specific function: Catalyzes an electroneutral exchange between arginine and ornithine to allow high-efficiency energy conversion in the arginine deiminase pathway [H]

COG id: COG0531

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787890, Length=461, Percent_Identity=47.5054229934924, Blast_Score=419, Evalue=1e-118,
Organism=Escherichia coli, GI2367353, Length=414, Percent_Identity=28.2608695652174, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI1786908, Length=423, Percent_Identity=25.7683215130024, Blast_Score=95, Evalue=9e-21,
Organism=Escherichia coli, GI1790575, Length=350, Percent_Identity=27.7142857142857, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004754
- InterPro:   IPR022461 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 50125; Mature: 49994

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AEEKKLGLFALIALVIGSMIGGGAFNLASDMASGAGAGAILIGWIITGVGMIALAFSFQ
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH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HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9053381; 11792842 [H]