Click here to switch to the map view.

The map label for this gene is yxdJ [H]

Identifier: 52787820

GI number: 52787820

Start: 3970756

End: 3971130

Strand: Direct

Name: yxdJ [H]

Synonym: BLi04143

Alternate gene names: 52787820

Gene position: 3970756-3971130 (Clockwise)

Preceding gene: 52787818

Following gene: 52787821

Centisome position: 94.03

GC content: 45.6

Gene sequence:

>375_bases
ATGACGAAAATCATGATTGTCGAGGACAGCGAAGACATTCGGAAGCTTTTACGCGATCATTTAGAAAAATACGGATACGA
AACTGTTGCAGCGACTGATTTCACCTCTATCCTTGAAATATTTCTCCAAGAGAAGCCCGACCTGGCATTGCTTGACATCA
ATCTGCCGGCATACGACGGTTACTACTGGTGCAGGCAAATCCGCCAGCATTCGACTTGTCCGATCATTTTCATTTCGGCG
AGAAGCGGAGAAATGGATCAGGTCATGGCGATCGAAAACGGCGGCGATGATTATATAGAGAAGCCTTTTTCCTATGAGGT
GGTCTCGCTAAAATTAAAGGCCAAATTCGCAGGGCATTTGGAGAATACGCAGTAA

Upstream 100 bases:

>100_bases
TGAAAAAAAACTTTTTATGATATTCTTAACATTAGAGGCCCTTCACTGCCGCTTTTATAAAGAAATCGGCAGCGGAGACT
TGTTCATAGGAGTGTTCAAA

Downstream 100 bases:

>100_bases
AACAAGGTGAAAAAGTGATTGAATTTGAAGGCGTCCAGCTGTTTGTCGAACGTTTTGAGCTGCACTGCCGAAATGAGAAG
CTCGAGCTTTCAAAAAAGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 123

Protein sequence:

>124_residues
MTKIMIVEDSEDIRKLLRDHLEKYGYETVAATDFTSILEIFLQEKPDLALLDINLPAYDGYYWCRQIRQHSTCPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYEVVSLKLKAKFAGHLENTQ

Sequences:

>Translated_124_residues
MTKIMIVEDSEDIRKLLRDHLEKYGYETVAATDFTSILEIFLQEKPDLALLDINLPAYDGYYWCRQIRQHSTCPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYEVVSLKLKAKFAGHLENTQ
>Mature_123_residues
TKIMIVEDSEDIRKLLRDHLEKYGYETVAATDFTSILEIFLQEKPDLALLDINLPAYDGYYWCRQIRQHSTCPIIFISAR
SGEMDQVMAIENGGDDYIEKPFSYEVVSLKLKAKFAGHLENTQ

Specific function: Probable member of the two-component regulatory system yxdK/yxdJ. Positively regulates the expression of the yxdLMyxeA operon by direct interaction with its promoter region. Could also indirectly regulate the expression of the dlt operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786911, Length=123, Percent_Identity=39.0243902439024, Blast_Score=93, Evalue=6e-21,
Organism=Escherichia coli, GI1788394, Length=112, Percent_Identity=38.3928571428571, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1790863, Length=110, Percent_Identity=32.7272727272727, Blast_Score=80, Evalue=4e-17,
Organism=Escherichia coli, GI1786599, Length=115, Percent_Identity=35.6521739130435, Blast_Score=79, Evalue=9e-17,
Organism=Escherichia coli, GI1789809, Length=113, Percent_Identity=32.7433628318584, Blast_Score=77, Evalue=4e-16,
Organism=Escherichia coli, GI1787229, Length=110, Percent_Identity=33.6363636363636, Blast_Score=75, Evalue=9e-16,
Organism=Escherichia coli, GI1790860, Length=112, Percent_Identity=32.1428571428571, Blast_Score=74, Evalue=3e-15,
Organism=Escherichia coli, GI87082012, Length=117, Percent_Identity=29.9145299145299, Blast_Score=70, Evalue=4e-14,
Organism=Escherichia coli, GI145693140, Length=101, Percent_Identity=34.6534653465347, Blast_Score=70, Evalue=4e-14,
Organism=Escherichia coli, GI1788550, Length=111, Percent_Identity=31.5315315315315, Blast_Score=70, Evalue=4e-14,
Organism=Escherichia coli, GI145693157, Length=110, Percent_Identity=31.8181818181818, Blast_Score=66, Evalue=8e-13,
Organism=Escherichia coli, GI1787375, Length=114, Percent_Identity=31.5789473684211, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI2367329, Length=114, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 14313; Mature: 14181

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKIMIVEDSEDIRKLLRDHLEKYGYETVAATDFTSILEIFLQEKPDLALLDINLPAYDG
CCEEEEEECCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
YYWCRQIRQHSTCPIIFISARSGEMDQVMAIENGGDDYIEKPFSYEVVSLKLKAKFAGHL
HHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCCCHHHCCCCCEEEEEEEEEEEECCCC
ENTQ
CCCC
>Mature Secondary Structure 
TKIMIVEDSEDIRKLLRDHLEKYGYETVAATDFTSILEIFLQEKPDLALLDINLPAYDG
CEEEEEECCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
YYWCRQIRQHSTCPIIFISARSGEMDQVMAIENGGDDYIEKPFSYEVVSLKLKAKFAGHL
HHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCCCHHHCCCCCEEEEEEEEEEEECCCC
ENTQ
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7952181; 9384377 [H]