Click here to switch to the map view.

The map label for this gene is yfiM [H]

Identifier: 52787681

GI number: 52787681

Start: 3827505

End: 3828626

Strand: Reverse

Name: yfiM [H]

Synonym: BLi04004

Alternate gene names: 52787681

Gene position: 3828626-3827505 (Counterclockwise)

Preceding gene: 52787682

Following gene: 52787680

Centisome position: 90.67

GC content: 48.31

Gene sequence:

>1122_bases
TTGAATACACTCATCATTGCGAAAAAAGAAATTGTATCTGCTTTTCGGGACAAACGGACGTTCCTTTTTATGCTGGCATT
TCCGATTGTACTGATTATGATTTTAGGCACTGCGCTGACGAATGCTTTCGATCAACAAGCAGCGGTCGGCGAGGTTCGTG
TTTTGTATAAAGACAATTCTGACGGAGCGTTTTCGCAAGGCTTTAAAACATTCGTAAAGGAAGCGAAAACATCCGGCGTT
CATTTTAAAAAAGTGTTGTCCGATATGGATGAAAAACAAGAAATCAAACAGGGGAACTACGATGCTTATCTTGAGATCGA
AAACAGCGGCATCAAGCTTTACCAAATGGATAAAAACAGTATGAAAAACAGCATTATTCAAGGAATGCTGACCGCGTTTG
CAAACCGGTACAATGCCGCAGCGGAGATCATCAAAGCTGCTCCTGAGCAAGCGGGCGCCGTGCTCGGGGACGCACCGGGC
GACAATTATATCAAGGAGACGTCGCTCAGCTCAGACAGAAAGCCCAGCTCCATGGATTATTATGCGGTTGCCATGACCAC
TCTGATCGCGCTTTACAGTGCATTAAGCGCCAGCTATTTAATAAGGGGGGAGCGGCTTAGAAAAACAGCCGACCGGCTGA
TCGCGGCACCGGTTCATAAAGGCGAGATCTTTGCGGGTAAGCTGATCGGCAATCTTGTGACAAACGGATTGTGTATTTTT
GCCGTCGTCGCAGTCAGCAAATACGTATTTAAAGCGTACTGGGGAGAGCATCTTGGGCTTGTAGCGGCCGTGCTGTTCAG
CATCGTATTGTTTGCCGTATGCCTCGGCCTCGGCGTCAGTTATTTGACGAGAACGGGGGAAGCGGCAGTGGCGATCATTA
ACGTGTTGATTCCGCTAGTTGCATTTTTCGGGGGCGCTTATTTTCCTGTCGACGATGCGGAAGGTGTTTTAGCTTTGATC
ACAGACCTGTCTCCGCTCGCCTGGACGAACGAAGCTATTATGAACATCATATTTGCGGACGATTTAGCGGCAGGGCTGCC
TGCCATCTTGCTGAACATCGGCTTATCCCTGTTATTTCTGCTGATTGCCGTTGTCTCATTGCAGAGAAGGGAGGGGCTGT
AG

Upstream 100 bases:

>100_bases
GCCGAGATTCGTTCATTGGAAGAAAAAGCGCCTAATTTGGAAACCGTGTTCCTGACCTTGACCGGAAGACAGTTGCGCGA
TTAGAAAGGAGGTCCAAGGT

Downstream 100 bases:

>100_bases
GATGAAAGAAATGCTATGGCTTGTCAAAAACACACTGAATGTCACTTTTAAAAAGAAGATCAATATCTTTCTGTTTGTAT
GTCTGCCCTTGCTAGGCATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MNTLIIAKKEIVSAFRDKRTFLFMLAFPIVLIMILGTALTNAFDQQAAVGEVRVLYKDNSDGAFSQGFKTFVKEAKTSGV
HFKKVLSDMDEKQEIKQGNYDAYLEIENSGIKLYQMDKNSMKNSIIQGMLTAFANRYNAAAEIIKAAPEQAGAVLGDAPG
DNYIKETSLSSDRKPSSMDYYAVAMTTLIALYSALSASYLIRGERLRKTADRLIAAPVHKGEIFAGKLIGNLVTNGLCIF
AVVAVSKYVFKAYWGEHLGLVAAVLFSIVLFAVCLGLGVSYLTRTGEAAVAIINVLIPLVAFFGGAYFPVDDAEGVLALI
TDLSPLAWTNEAIMNIIFADDLAAGLPAILLNIGLSLLFLLIAVVSLQRREGL

Sequences:

>Translated_373_residues
MNTLIIAKKEIVSAFRDKRTFLFMLAFPIVLIMILGTALTNAFDQQAAVGEVRVLYKDNSDGAFSQGFKTFVKEAKTSGV
HFKKVLSDMDEKQEIKQGNYDAYLEIENSGIKLYQMDKNSMKNSIIQGMLTAFANRYNAAAEIIKAAPEQAGAVLGDAPG
DNYIKETSLSSDRKPSSMDYYAVAMTTLIALYSALSASYLIRGERLRKTADRLIAAPVHKGEIFAGKLIGNLVTNGLCIF
AVVAVSKYVFKAYWGEHLGLVAAVLFSIVLFAVCLGLGVSYLTRTGEAAVAIINVLIPLVAFFGGAYFPVDDAEGVLALI
TDLSPLAWTNEAIMNIIFADDLAAGLPAILLNIGLSLLFLLIAVVSLQRREGL
>Mature_373_residues
MNTLIIAKKEIVSAFRDKRTFLFMLAFPIVLIMILGTALTNAFDQQAAVGEVRVLYKDNSDGAFSQGFKTFVKEAKTSGV
HFKKVLSDMDEKQEIKQGNYDAYLEIENSGIKLYQMDKNSMKNSIIQGMLTAFANRYNAAAEIIKAAPEQAGAVLGDAPG
DNYIKETSLSSDRKPSSMDYYAVAMTTLIALYSALSASYLIRGERLRKTADRLIAAPVHKGEIFAGKLIGNLVTNGLCIF
AVVAVSKYVFKAYWGEHLGLVAAVLFSIVLFAVCLGLGVSYLTRTGEAAVAIINVLIPLVAFFGGAYFPVDDAEGVLALI
TDLSPLAWTNEAIMNIIFADDLAAGLPAILLNIGLSLLFLLIAVVSLQRREGL

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 40408; Mature: 40408

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTLIIAKKEIVSAFRDKRTFLFMLAFPIVLIMILGTALTNAFDQQAAVGEVRVLYKDNS
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCC
DGAFSQGFKTFVKEAKTSGVHFKKVLSDMDEKQEIKQGNYDAYLEIENSGIKLYQMDKNS
CCCHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHCCCCCEEEEEECCCEEEEECCHHH
MKNSIIQGMLTAFANRYNAAAEIIKAAPEQAGAVLGDAPGDNYIKETSLSSDRKPSSMDY
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCEECCCCCCCCHHHCCCCCCCCCCCCHH
YAVAMTTLIALYSALSASYLIRGERLRKTADRLIAAPVHKGEIFAGKLIGNLVTNGLCIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
AVVAVSKYVFKAYWGEHLGLVAAVLFSIVLFAVCLGLGVSYLTRTGEAAVAIINVLIPLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHH
AFFGGAYFPVDDAEGVLALITDLSPLAWTNEAIMNIIFADDLAAGLPAILLNIGLSLLFL
HHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIAVVSLQRREGL
HHHHHHHHHHCCC
>Mature Secondary Structure
MNTLIIAKKEIVSAFRDKRTFLFMLAFPIVLIMILGTALTNAFDQQAAVGEVRVLYKDNS
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCC
DGAFSQGFKTFVKEAKTSGVHFKKVLSDMDEKQEIKQGNYDAYLEIENSGIKLYQMDKNS
CCCHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHCCCCCEEEEEECCCEEEEECCHHH
MKNSIIQGMLTAFANRYNAAAEIIKAAPEQAGAVLGDAPGDNYIKETSLSSDRKPSSMDY
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCEECCCCCCCCHHHCCCCCCCCCCCCHH
YAVAMTTLIALYSALSASYLIRGERLRKTADRLIAAPVHKGEIFAGKLIGNLVTNGLCIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
AVVAVSKYVFKAYWGEHLGLVAAVLFSIVLFAVCLGLGVSYLTRTGEAAVAIINVLIPLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHH
AFFGGAYFPVDDAEGVLALITDLSPLAWTNEAIMNIIFADDLAAGLPAILLNIGLSLLFL
HHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIAVVSLQRREGL
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8973323; 9384377 [H]