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The map label for this gene is yagI [H]

Identifier: 52787672

GI number: 52787672

Start: 3819373

End: 3820152

Strand: Direct

Name: yagI [H]

Synonym: BLi03995

Alternate gene names: 52787672

Gene position: 3819373-3820152 (Clockwise)

Preceding gene: 52787664

Following gene: 52787673

Centisome position: 90.45

GC content: 51.28

Gene sequence:

>780_bases
ATGACTGTTGAGACGAAGGACCACCAGCTGCTCGGTTCAGTAAAAAATGCGCTTCGGCTGCTTCAATCGTTTACCTTAGA
CACACCGGAAAAGAAACTAACCGAACTCGCCTCGTCGCTTGGCCTCGGAAAAAGCACGGTCTCGCGCCTTTTGTCTACAT
TGGAAAGCGAAGGGTTTGTCATGAAGGACCCGGAATCCAGAAGATACAAGCTCGGCTTATCGGTCCTGCAGTTAAACACC
ATTGTCAACTCCACTCTTGAAATCAACCGCGAATCCCTGCCGGTCCTCAAACGGCTGACCGATGAGACCGGCGAAACGTC
GCATATCGCGATGCGCCGCGGTCTCAGCGTCGTTTATCTCAATCGGACGGAATGCCCCCGCCCGGTCGAACTTCTCTCAT
ATATCGGGCGGCAAAACCCGATGCACTGCACAAGCTCAGGTAAGGTGCTTCTCGCCTTTGATGAAGAGGGCATATTGGAC
GAGTATGTGAAGGAAGGCTTGAAAAGCTGTACGAAAGAAACCATTACAGACGGGGACAAATTGAGGGATGTGCTGAAAAC
CGTTAAAGAAAACGGATTTGACGTCAGTTGCGGGGAATTCATAGATGGTGTCACATCAATCTCAGCTCCCGTCAGAAACC
ACGCAGGTCGAGTGTTGTACGCCGTCAGTGTCGTAGGCCCTGCAAAACGCATCAAGGCCCGGCAGGCGAAAATCATTTAC
CAAGTGAAACAAGCGGCCCGGGATATTTCCGAAAGGATCGGGTACTGGAAACGAATATAA

Upstream 100 bases:

>100_bases
TTTTTCCGAAAATTTGATATTTTCCGCTTTTTTATTTTTTATATCGTGTTATATTATGGAATAAAAGGAAACAAAAACAA
GGGAGAGAGTTGAGGAACCT

Downstream 100 bases:

>100_bases
AAATTGGGGGAATCAGCTTTGTATGATCTTCACACGCACTTTATACCGCGCGATGTGCTGCTTTGGCTGGAAGACAATGA
AAAGAGAGTCCACGCTGTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MTVETKDHQLLGSVKNALRLLQSFTLDTPEKKLTELASSLGLGKSTVSRLLSTLESEGFVMKDPESRRYKLGLSVLQLNT
IVNSTLEINRESLPVLKRLTDETGETSHIAMRRGLSVVYLNRTECPRPVELLSYIGRQNPMHCTSSGKVLLAFDEEGILD
EYVKEGLKSCTKETITDGDKLRDVLKTVKENGFDVSCGEFIDGVTSISAPVRNHAGRVLYAVSVVGPAKRIKARQAKIIY
QVKQAARDISERIGYWKRI

Sequences:

>Translated_259_residues
MTVETKDHQLLGSVKNALRLLQSFTLDTPEKKLTELASSLGLGKSTVSRLLSTLESEGFVMKDPESRRYKLGLSVLQLNT
IVNSTLEINRESLPVLKRLTDETGETSHIAMRRGLSVVYLNRTECPRPVELLSYIGRQNPMHCTSSGKVLLAFDEEGILD
EYVKEGLKSCTKETITDGDKLRDVLKTVKENGFDVSCGEFIDGVTSISAPVRNHAGRVLYAVSVVGPAKRIKARQAKIIY
QVKQAARDISERIGYWKRI
>Mature_258_residues
TVETKDHQLLGSVKNALRLLQSFTLDTPEKKLTELASSLGLGKSTVSRLLSTLESEGFVMKDPESRRYKLGLSVLQLNTI
VNSTLEINRESLPVLKRLTDETGETSHIAMRRGLSVVYLNRTECPRPVELLSYIGRQNPMHCTSSGKVLLAFDEEGILDE
YVKEGLKSCTKETITDGDKLRDVLKTVKENGFDVSCGEFIDGVTSISAPVRNHAGRVLYAVSVVGPAKRIKARQAKIIYQ
VKQAARDISERIGYWKRI

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=249, Percent_Identity=31.3253012048193, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI1788131, Length=248, Percent_Identity=30.6451612903226, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1786715, Length=246, Percent_Identity=26.8292682926829, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1789999, Length=249, Percent_Identity=29.3172690763052, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI87082359, Length=250, Percent_Identity=26.8, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1790752, Length=230, Percent_Identity=26.5217391304348, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1788581, Length=224, Percent_Identity=28.125, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 28840; Mature: 28708

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVETKDHQLLGSVKNALRLLQSFTLDTPEKKLTELASSLGLGKSTVSRLLSTLESEGFV
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCE
MKDPESRRYKLGLSVLQLNTIVNSTLEINRESLPVLKRLTDETGETSHIAMRRGLSVVYL
EECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEE
NRTECPRPVELLSYIGRQNPMHCTSSGKVLLAFDEEGILDEYVKEGLKSCTKETITDGDK
CCCCCCCHHHHHHHHCCCCCCEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHH
LRDVLKTVKENGFDVSCGEFIDGVTSISAPVRNHAGRVLYAVSVVGPAKRIKARQAKIIY
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEHHCHHHHHHHHHHHHHH
QVKQAARDISERIGYWKRI
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TVETKDHQLLGSVKNALRLLQSFTLDTPEKKLTELASSLGLGKSTVSRLLSTLESEGFV
CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCE
MKDPESRRYKLGLSVLQLNTIVNSTLEINRESLPVLKRLTDETGETSHIAMRRGLSVVYL
EECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEE
NRTECPRPVELLSYIGRQNPMHCTSSGKVLLAFDEEGILDEYVKEGLKSCTKETITDGDK
CCCCCCCHHHHHHHHCCCCCCEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHH
LRDVLKTVKENGFDVSCGEFIDGVTSISAPVRNHAGRVLYAVSVVGPAKRIKARQAKIIY
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEHHCHHHHHHHHHHHHHH
QVKQAARDISERIGYWKRI
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]