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The map label for this gene is rbsD

Identifier: 52787522

GI number: 52787522

Start: 3670241

End: 3670636

Strand: Direct

Name: rbsD

Synonym: BLi03842

Alternate gene names: 52787522

Gene position: 3670241-3670636 (Clockwise)

Preceding gene: 52787521

Following gene: 52787523

Centisome position: 86.92

GC content: 50.0

Gene sequence:

>396_bases
ATGAAAAAACACGGAATATTAAACAGCCATATCGCAAAATTGCTGGCCGATCTCGGGCATACCGATACCATCGTCATCGC
GGACGCCGGTCTGCCCGTTCCGCCCGGCGTCCCCAAAATCGATCTCGCACTGACATTGGGTACGCCCGGATTTCGAGAGG
TTACAAAGCTCATCGCCGATGAAATGGTTGTCGAAAAAGTGACGGCAGCCCAAGAAATAGAAAGCGTCAATCCCGGTCAA
GCCGCATTTTTAAAAGCGGAATTTTCAAACCAAAAGATTGACTATATCCCGCACGAAGCATTCAAAAAGGCAACGAGCCA
GGCGAAAGCGGTCATTCGCACAGGGGAAGCAACGCCTTATGCAAATTGCATCTTGCACGCGGGAGTGATCTTTTAG

Upstream 100 bases:

>100_bases
CTGCCTTGCGCTTTGCGAACCGGGCGGCTTCCCTGTCGGTTCTGAAATTCGGCGCACAAGGCGGCATGCCAAAACGGGAT
GAAGTGGAGCGTGAACTGTC

Downstream 100 bases:

>100_bases
ATGTTTACATTCTACATCTGGAAAGAAGGGATAGCCCATGCATATTAAAATGAAGGACATTTTTAAAGCCTTTGGCCAAA
ACCAGGTGCTGTCCGGCGTT

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MKKHGILNSHIAKLLADLGHTDTIVIADAGLPVPPGVPKIDLALTLGTPGFREVTKLIADEMVVEKVTAAQEIESVNPGQ
AAFLKAEFSNQKIDYIPHEAFKKATSQAKAVIRTGEATPYANCILHAGVIF

Sequences:

>Translated_131_residues
MKKHGILNSHIAKLLADLGHTDTIVIADAGLPVPPGVPKIDLALTLGTPGFREVTKLIADEMVVEKVTAAQEIESVNPGQ
AAFLKAEFSNQKIDYIPHEAFKKATSQAKAVIRTGEATPYANCILHAGVIF
>Mature_131_residues
MKKHGILNSHIAKLLADLGHTDTIVIADAGLPVPPGVPKIDLALTLGTPGFREVTKLIADEMVVEKVTAAQEIESVNPGQ
AAFLKAEFSNQKIDYIPHEAFKKATSQAKAVIRTGEATPYANCILHAGVIF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=45.3237410071942, Blast_Score=124, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_BACLD (Q65E56)

Other databases:

- EMBL:   CP000002
- EMBL:   AE017333
- RefSeq:   YP_080923.1
- RefSeq:   YP_093351.1
- HSSP:   P36946
- ProteinModelPortal:   Q65E56
- SMR:   Q65E56
- STRING:   Q65E56
- EnsemblBacteria:   EBBACT00000056513
- EnsemblBacteria:   EBBACT00000061822
- GeneID:   3028836
- GeneID:   3101051
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi03842
- KEGG:   bli:BL02440
- NMPDR:   fig|279010.5.peg.3989
- eggNOG:   COG1869
- GeneTree:   EBGT00050000001557
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- ProtClustDB:   PRK11797
- BioCyc:   BLIC279010-1:BLI03842-MONOMER
- BioCyc:   BLIC279010:BL02440-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 13968; Mature: 13968

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 98-98

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKHGILNSHIAKLLADLGHTDTIVIADAGLPVPPGVPKIDLALTLGTPGFREVTKLIAD
CCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHHHH
EMVVEKVTAAQEIESVNPGQAAFLKAEFSNQKIDYIPHEAFKKATSQAKAVIRTGEATPY
HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCH
ANCILHAGVIF
HHHHHHHCCCC
>Mature Secondary Structure
MKKHGILNSHIAKLLADLGHTDTIVIADAGLPVPPGVPKIDLALTLGTPGFREVTKLIAD
CCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHHHH
EMVVEKVTAAQEIESVNPGQAAFLKAEFSNQKIDYIPHEAFKKATSQAKAVIRTGEATPY
HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCH
ANCILHAGVIF
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA