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The map label for this gene is rbsR [H]

Identifier: 52787520

GI number: 52787520

Start: 3668323

End: 3669360

Strand: Direct

Name: rbsR [H]

Synonym: BLi03840

Alternate gene names: 52787520

Gene position: 3668323-3669360 (Clockwise)

Preceding gene: 52787514

Following gene: 52787521

Centisome position: 86.87

GC content: 48.07

Gene sequence:

>1038_bases
ATGGATCGTGATAATCTTTATGTAAACGGTTACACAAATAGAGAGGAGAAGGCTTTTTTGGCTACGATTAAAGACGTCGC
ACTTGCTGCAAAAGTATCTGTCGCTACGGTTTCCCGGGTATTAAATGAGACGGGATACGTTCATGAAGACACGAGGGCGC
GCGTGCTGAAAGCGATGGAAGAACTGAATTACCACCCGAATGAAGTAGCCAGGTCTCTCTATAAAAGGGAGTCCAGACTG
ATCGGACTGCTGCTGCCGGATATCACAAACCCGTTCTTTCCTCAGCTTGCCCGCGGCGTTGAAGATGAGATCCACCGCCT
CGGCTTTCGGCTCATATTTGGAAACAGCGATGAAAATCTGGAAAAAGAGCTTGATTATATGCAGACGTTTAAACAAAATC
ATGTGGTCGGAGTCATTTCAGCGACCAATTATCCGGATGCGCCAAATTATCAAGACTTGTCCATGCCGATCGTCTTTCTT
GACCGGACGGGCGAGAATGCGCCGGCTGTATTTGCGGACAGCCGCGAAGGAGGCAGAATCGCAGCGGCTGAGATGATCAA
GAGGAACGCGAAACGGATTACGCTGATTAAAGGACCGGCTCACCTTCAGACTGCAAGAGACCGTTTCAACGGAGCGCTGG
ACGTGCTAAGCGGAGCCGATATCGATTTTCACGTCATGAAAACCGAGACATTTTCATTTCCGGAAGCCCAAAAACGGGCG
GCGGAGCTGTTTGGCACATATCCGGAAACAGACGGCGTGATCGCAAGCAATGACATTGTGGCGACAGCCGTTTTGCATGA
AGCCTTAAAACGGAAGATCAAAGTTCCCGATGAACTGCAGATTATCGGCTTTGATGACATACCGCAAAGCGAATTGCTTT
TCCCCTCTTTATCAACGATCAGGCAGCCCGCCTATGAAATGGGAAAAGAAGCTGCAAAACTGCTGCTTAGATTAATGAAA
AATGAATATATTGAACAATCGGCAGTTCAGATGCCGGTTGCCTTTATTGAAAGACAAACGACAAGAAAGGCGGAATGA

Upstream 100 bases:

>100_bases
ATTGTTACTGTATTCGCCATTAAACGCCCCTATATATGTCTCGATATCCCAGCCCGGTCTAAAATTTCAGTGTTCATCCA
TTTTTTTATTGTGATTTTAA

Downstream 100 bases:

>100_bases
CAATGAGTAAAATATGCGTGATCGGCAGCTCTTCGATGGATTTAGTCGTGACATCGCCCAAGCGGCCGGCCGCCGGAGAA
ACGGTGCTTGGCGAATCTTT

Product: RbsR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MDRDNLYVNGYTNREEKAFLATIKDVALAAKVSVATVSRVLNETGYVHEDTRARVLKAMEELNYHPNEVARSLYKRESRL
IGLLLPDITNPFFPQLARGVEDEIHRLGFRLIFGNSDENLEKELDYMQTFKQNHVVGVISATNYPDAPNYQDLSMPIVFL
DRTGENAPAVFADSREGGRIAAAEMIKRNAKRITLIKGPAHLQTARDRFNGALDVLSGADIDFHVMKTETFSFPEAQKRA
AELFGTYPETDGVIASNDIVATAVLHEALKRKIKVPDELQIIGFDDIPQSELLFPSLSTIRQPAYEMGKEAAKLLLRLMK
NEYIEQSAVQMPVAFIERQTTRKAE

Sequences:

>Translated_345_residues
MDRDNLYVNGYTNREEKAFLATIKDVALAAKVSVATVSRVLNETGYVHEDTRARVLKAMEELNYHPNEVARSLYKRESRL
IGLLLPDITNPFFPQLARGVEDEIHRLGFRLIFGNSDENLEKELDYMQTFKQNHVVGVISATNYPDAPNYQDLSMPIVFL
DRTGENAPAVFADSREGGRIAAAEMIKRNAKRITLIKGPAHLQTARDRFNGALDVLSGADIDFHVMKTETFSFPEAQKRA
AELFGTYPETDGVIASNDIVATAVLHEALKRKIKVPDELQIIGFDDIPQSELLFPSLSTIRQPAYEMGKEAAKLLLRLMK
NEYIEQSAVQMPVAFIERQTTRKAE
>Mature_345_residues
MDRDNLYVNGYTNREEKAFLATIKDVALAAKVSVATVSRVLNETGYVHEDTRARVLKAMEELNYHPNEVARSLYKRESRL
IGLLLPDITNPFFPQLARGVEDEIHRLGFRLIFGNSDENLEKELDYMQTFKQNHVVGVISATNYPDAPNYQDLSMPIVFL
DRTGENAPAVFADSREGGRIAAAEMIKRNAKRITLIKGPAHLQTARDRFNGALDVLSGADIDFHVMKTETFSFPEAQKRA
AELFGTYPETDGVIASNDIVATAVLHEALKRKIKVPDELQIIGFDDIPQSELLFPSLSTIRQPAYEMGKEAAKLLLRLMK
NEYIEQSAVQMPVAFIERQTTRKAE

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=331, Percent_Identity=31.7220543806647, Blast_Score=158, Evalue=5e-40,
Organism=Escherichia coli, GI1787948, Length=331, Percent_Identity=32.3262839879154, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1790194, Length=327, Percent_Identity=29.6636085626911, Blast_Score=147, Evalue=9e-37,
Organism=Escherichia coli, GI1789202, Length=303, Percent_Identity=33.003300330033, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1788474, Length=305, Percent_Identity=31.1475409836066, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1787580, Length=314, Percent_Identity=26.7515923566879, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789068, Length=306, Percent_Identity=26.797385620915, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1786540, Length=329, Percent_Identity=25.531914893617, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1790715, Length=306, Percent_Identity=24.5098039215686, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI48994940, Length=310, Percent_Identity=25.8064516129032, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787906, Length=335, Percent_Identity=25.0746268656716, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1786268, Length=273, Percent_Identity=25.2747252747253, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790192, Length=259, Percent_Identity=24.3243243243243, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 38832; Mature: 38832

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRDNLYVNGYTNREEKAFLATIKDVALAAKVSVATVSRVLNETGYVHEDTRARVLKAME
CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
ELNYHPNEVARSLYKRESRLIGLLLPDITNPFFPQLARGVEDEIHRLGFRLIFGNSDENL
HCCCCHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCH
EKELDYMQTFKQNHVVGVISATNYPDAPNYQDLSMPIVFLDRTGENAPAVFADSREGGRI
HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCH
AAAEMIKRNAKRITLIKGPAHLQTARDRFNGALDVLSGADIDFHVMKTETFSFPEAQKRA
HHHHHHHCCCCEEEEEECCHHHHHHHHHHCCHHHHHCCCCCEEEEEECCCCCCCHHHHHH
AELFGTYPETDGVIASNDIVATAVLHEALKRKIKVPDELQIIGFDDIPQSELLFPSLSTI
HHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHCCCCHHHH
RQPAYEMGKEAAKLLLRLMKNEYIEQSAVQMPVAFIERQTTRKAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDRDNLYVNGYTNREEKAFLATIKDVALAAKVSVATVSRVLNETGYVHEDTRARVLKAME
CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
ELNYHPNEVARSLYKRESRLIGLLLPDITNPFFPQLARGVEDEIHRLGFRLIFGNSDENL
HCCCCHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCH
EKELDYMQTFKQNHVVGVISATNYPDAPNYQDLSMPIVFLDRTGENAPAVFADSREGGRI
HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCH
AAAEMIKRNAKRITLIKGPAHLQTARDRFNGALDVLSGADIDFHVMKTETFSFPEAQKRA
HHHHHHHCCCCEEEEEECCHHHHHHHHHHCCHHHHHCCCCCEEEEEECCCCCCCHHHHHH
AELFGTYPETDGVIASNDIVATAVLHEALKRKIKVPDELQIIGFDDIPQSELLFPSLSTI
HHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHCCCCHHHH
RQPAYEMGKEAAKLLLRLMKNEYIEQSAVQMPVAFIERQTTRKAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]