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The map label for this gene is kduI

Identifier: 52787509

GI number: 52787509

Start: 3656044

End: 3656871

Strand: Direct

Name: kduI

Synonym: BLi03829

Alternate gene names: 52787509

Gene position: 3656044-3656871 (Clockwise)

Preceding gene: 52787500

Following gene: 52787510

Centisome position: 86.58

GC content: 46.98

Gene sequence:

>828_bases
ATGGAAAATCGTTATTCTGTTCATCCAGAACAAGCGAAACGATTCACAACCGCAGAGCTTCGCGAGCATTTTTTAATAGA
GTCATTGTTTGTTGAAAACAAACTGAATATGTTTTATTCGCATGAAGACAGGGTCGTGATCGGCGGAGCCGTTCCAGTAA
AGGAGTCCATAGCGCTCGATGCCGGCGATTTTTTAAAAACGGACTATTTCCTAGAACGGCGCGAAATCGGGATTGTGAAT
GTCGGCAAGCCCGGTGCGGTTAAAGTCGGTGATGAAGAATACGTACTGGAGCACAAAGACTTTCTGTATATCGGCCTGGG
AAATAAAGACGTTTTCTTCTCAAGCTTGAATGAAGGCGGGGCCAAATTTTATTTCATCTCGGCGACGGCACACCAAAAGT
ATCCGGTGCAAAAAGCTTCTCTTTCAGAGCTCCCATACGATCATTTAGGAGAAGAAGCCTCTTCAAATGTTCGTAATCTA
TACAAAGTGATTCATGCAGACGGCATTCAAAGCTGCCAGCTGATGATGGGCATTACGTTTCTTGAACCTAATAACACATG
GAACACAATGCCTGCGCATGTCCACGACCGGCGGATGGAGGTTTACCTGTATCTTGATCTTGCTGAGGATGCAAAGGTGT
TTCATTTCATGGGCGAACCGACGGAGACCCGGCATCTTGTCGTCGGGAACGAACAGGCTGTCATTTCACCCGCGTGGTCT
GTCCACTCGGGCTCCGGCACATCCAACTACTGCTTTATATGGGCGATGGCCGGAGAAAACTACACATTTAAGGACATGGA
TGCTGTCCCGATGAATGTCATTCGGTAA

Upstream 100 bases:

>100_bases
CCATTATTTACTTTAAAATTCATGTTTGAAACCGTTACCAAAAACTTTTGGCACTTCATTCAAGTCAGTCTAAAAACGTC
CAATTCAAGGAGGAGAAGGT

Downstream 100 bases:

>100_bases
GGACGTGAACGTGAGATGGGATATCTTGAATCGTATTTTTCACTTGAAGGCAAAACGGCGCTTGTCACAGGCCCGGGAAC
GGGAATCGGCAAAGGGATTG

Product: 5-keto-4-deoxyuronate isomerase

Products: NA

Alternate protein names: 5-keto-4-deoxyuronate isomerase; DKI isomerase

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MENRYSVHPEQAKRFTTAELREHFLIESLFVENKLNMFYSHEDRVVIGGAVPVKESIALDAGDFLKTDYFLERREIGIVN
VGKPGAVKVGDEEYVLEHKDFLYIGLGNKDVFFSSLNEGGAKFYFISATAHQKYPVQKASLSELPYDHLGEEASSNVRNL
YKVIHADGIQSCQLMMGITFLEPNNTWNTMPAHVHDRRMEVYLYLDLAEDAKVFHFMGEPTETRHLVVGNEQAVISPAWS
VHSGSGTSNYCFIWAMAGENYTFKDMDAVPMNVIR

Sequences:

>Translated_275_residues
MENRYSVHPEQAKRFTTAELREHFLIESLFVENKLNMFYSHEDRVVIGGAVPVKESIALDAGDFLKTDYFLERREIGIVN
VGKPGAVKVGDEEYVLEHKDFLYIGLGNKDVFFSSLNEGGAKFYFISATAHQKYPVQKASLSELPYDHLGEEASSNVRNL
YKVIHADGIQSCQLMMGITFLEPNNTWNTMPAHVHDRRMEVYLYLDLAEDAKVFHFMGEPTETRHLVVGNEQAVISPAWS
VHSGSGTSNYCFIWAMAGENYTFKDMDAVPMNVIR
>Mature_275_residues
MENRYSVHPEQAKRFTTAELREHFLIESLFVENKLNMFYSHEDRVVIGGAVPVKESIALDAGDFLKTDYFLERREIGIVN
VGKPGAVKVGDEEYVLEHKDFLYIGLGNKDVFFSSLNEGGAKFYFISATAHQKYPVQKASLSELPYDHLGEEASSNVRNL
YKVIHADGIQSCQLMMGITFLEPNNTWNTMPAHVHDRRMEVYLYLDLAEDAKVFHFMGEPTETRHLVVGNEQAVISPAWS
VHSGSGTSNYCFIWAMAGENYTFKDMDAVPMNVIR

Specific function: Pectin degradation. [C]

COG id: COG3717

COG function: function code G; 5-keto 4-deoxyuronate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kduI family

Homologues:

Organism=Escherichia coli, GI1789209, Length=278, Percent_Identity=47.4820143884892, Blast_Score=284, Evalue=3e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): KDUI_BACLD (Q65E69)

Other databases:

- EMBL:   CP000002
- EMBL:   AE017333
- RefSeq:   YP_080910.2
- RefSeq:   YP_093338.1
- HSSP:   Q838L9
- ProteinModelPortal:   Q65E69
- SMR:   Q65E69
- STRING:   Q65E69
- EnsemblBacteria:   EBBACT00000055409
- EnsemblBacteria:   EBBACT00000061331
- GeneID:   3028079
- GeneID:   3101035
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi03829
- KEGG:   bli:BL02434
- NMPDR:   fig|279010.5.peg.3976
- eggNOG:   COG3717
- GeneTree:   EBGT00050000005995
- HOGENOM:   HBG301328
- ProtClustDB:   PRK00924
- BioCyc:   BLIC279010-1:BLI03829-MONOMER
- HAMAP:   MF_00687
- InterPro:   IPR011051
- InterPro:   IPR007045
- InterPro:   IPR021120
- PIRSF:   PIRSF006625

Pfam domain/function: PF04962 KduI; SSF51182 RmlC_like_cupin

EC number: =5.3.1.17

Molecular weight: Translated: 31216; Mature: 31216

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENRYSVHPEQAKRFTTAELREHFLIESLFVENKLNMFYSHEDRVVIGGAVPVKESIALD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEECCCCCCCHHEEEC
AGDFLKTDYFLERREIGIVNVGKPGAVKVGDEEYVLEHKDFLYIGLGNKDVFFSSLNEGG
CCCHHHHHHEEECCCCCEEECCCCCEEEECCCCEEEECCCEEEEEECCCCEEEEECCCCC
AKFYFISATAHQKYPVQKASLSELPYDHLGEEASSNVRNLYKVIHADGIQSCQLMMGITF
EEEEEEEECCCCCCCCCCCHHHHCCHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEE
LEPNNTWNTMPAHVHDRRMEVYLYLDLAEDAKVFHFMGEPTETRHLVVGNEQAVISPAWS
ECCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCEEEEECCCCEEEECCEE
VHSGSGTSNYCFIWAMAGENYTFKDMDAVPMNVIR
EECCCCCCCEEEEEEECCCCCEECCCCCCCHHHCC
>Mature Secondary Structure
MENRYSVHPEQAKRFTTAELREHFLIESLFVENKLNMFYSHEDRVVIGGAVPVKESIALD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEECCCCCCCHHEEEC
AGDFLKTDYFLERREIGIVNVGKPGAVKVGDEEYVLEHKDFLYIGLGNKDVFFSSLNEGG
CCCHHHHHHEEECCCCCEEECCCCCEEEECCCCEEEECCCEEEEEECCCCEEEEECCCCC
AKFYFISATAHQKYPVQKASLSELPYDHLGEEASSNVRNLYKVIHADGIQSCQLMMGITF
EEEEEEEECCCCCCCCCCCHHHHCCHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEE
LEPNNTWNTMPAHVHDRRMEVYLYLDLAEDAKVFHFMGEPTETRHLVVGNEQAVISPAWS
ECCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCEEEEECCCCEEEECCEE
VHSGSGTSNYCFIWAMAGENYTFKDMDAVPMNVIR
EECCCCCCCEEEEEEECCCCCEECCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA