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The map label for this gene is lytR

Identifier: 52787491

GI number: 52787491

Start: 3630835

End: 3631755

Strand: Direct

Name: lytR

Synonym: BLi03811

Alternate gene names: 52787491

Gene position: 3630835-3631755 (Clockwise)

Preceding gene: 52787476

Following gene: 52787493

Centisome position: 85.98

GC content: 43.76

Gene sequence:

>921_bases
ATGAGAGCTGAAAAGAGGAAGAAAAAGAAAAAAATTCTATATACAATTATCGCTTTGATTGGCATTTTCGTTCTCAGCAC
AGGCAGTTATGCCTATTACTTATGGCATAAAGCGGCATCTACTGTAGCGAACATTCATGAAAATATTAACAAATCAAAAA
AACGCGATTCAGCTGTTGACATTGATAACCATGACCCGTTTTCCGTGCTTCTCATGGGTGTCGATGAACGGGACGGTGAT
AAGGGGCGCGCAGACTCCCTCATCTATATGACGGTGAATCCGAAAACGAAAACGACTGAAATGGTCAGCATCCCGAGGGA
TACGTATACTGAAATTATCGGCAAAGGCAAGATGGATAAAATCAACCACTCCTACGCATTCGGCGGCGTTCAGATGACGG
TAGACACGGTTGAGAACTTCCTCGATGTTCCTGTCGACTACTTTATCAAAGTCAATATGGAAAGCTTCAAGGATGTCGTA
GATACGCTCGGCGGCATTACTGTAAACAGTACATTCGCTTTCAACTACGACGGATATTCATTCGGCAAAGGCGAGATTAC
GCTGAACGGAAAAGAAGCGCTCGCTTATACGAGAATGAGGAAAGAGGACCCGAACGGCGACTTCGGGCGCCAGAACAGGC
AGCGTCAAGTCATCGAAGGTATCATTAACAAAGGCGCCAATATATCATCCATCACGAAATTCGGAGATATGTTCAAAGTG
ATCGAAAACAACGTTAAAACGAATCTCACGTTCGACGATATGTGGGATATCCAATCCGGCTATAAAGAAGCCCGCTCAAA
AGTCATTCAGCATGAGCTGAAAGGCGACGGCACAAAAATCAACGGAATCTATTATTACAAAGCCGACGAAAGTTCCCTTT
CCGACATTACAGCCGAACTGAAAGAAAGCCTTAATAAATAA

Upstream 100 bases:

>100_bases
TAATGATTTCGTCTATCCAAAAGGACACATATAAATTTTTGTTGTTTTCGAATTTTAAGAAACTTATAATCAAAGTAGAC
TATTAAAAGGTGAGGGCTAT

Downstream 100 bases:

>100_bases
AAAAGCTTCCTGAAAAGGAAGCTTTCATATTGTTGACAAAATCCCAAAACCAAAACCAAAACGGTTTTGGTTTTGGGATT
TTGTCATCTTTTCAGCGTGA

Product: membrane-bound transcriptional regulator LytR

Products: NA

Alternate protein names: Membrane-bound protein lytR

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MRAEKRKKKKKILYTIIALIGIFVLSTGSYAYYLWHKAASTVANIHENINKSKKRDSAVDIDNHDPFSVLLMGVDERDGD
KGRADSLIYMTVNPKTKTTEMVSIPRDTYTEIIGKGKMDKINHSYAFGGVQMTVDTVENFLDVPVDYFIKVNMESFKDVV
DTLGGITVNSTFAFNYDGYSFGKGEITLNGKEALAYTRMRKEDPNGDFGRQNRQRQVIEGIINKGANISSITKFGDMFKV
IENNVKTNLTFDDMWDIQSGYKEARSKVIQHELKGDGTKINGIYYYKADESSLSDITAELKESLNK

Sequences:

>Translated_306_residues
MRAEKRKKKKKILYTIIALIGIFVLSTGSYAYYLWHKAASTVANIHENINKSKKRDSAVDIDNHDPFSVLLMGVDERDGD
KGRADSLIYMTVNPKTKTTEMVSIPRDTYTEIIGKGKMDKINHSYAFGGVQMTVDTVENFLDVPVDYFIKVNMESFKDVV
DTLGGITVNSTFAFNYDGYSFGKGEITLNGKEALAYTRMRKEDPNGDFGRQNRQRQVIEGIINKGANISSITKFGDMFKV
IENNVKTNLTFDDMWDIQSGYKEARSKVIQHELKGDGTKINGIYYYKADESSLSDITAELKESLNK
>Mature_306_residues
MRAEKRKKKKKILYTIIALIGIFVLSTGSYAYYLWHKAASTVANIHENINKSKKRDSAVDIDNHDPFSVLLMGVDERDGD
KGRADSLIYMTVNPKTKTTEMVSIPRDTYTEIIGKGKMDKINHSYAFGGVQMTVDTVENFLDVPVDYFIKVNMESFKDVV
DTLGGITVNSTFAFNYDGYSFGKGEITLNGKEALAYTRMRKEDPNGDFGRQNRQRQVIEGIINKGANISSITKFGDMFKV
IENNVKTNLTFDDMWDIQSGYKEARSKVIQHELKGDGTKINGIYYYKADESSLSDITAELKESLNK

Specific function: Attenuator role for operon expression

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LYAT_BACLD (Q65E87)

Other databases:

- EMBL:   CP000002
- EMBL:   AE017333
- RefSeq:   YP_080892.1
- RefSeq:   YP_093320.1
- STRING:   Q65E87
- EnsemblBacteria:   EBBACT00000056096
- EnsemblBacteria:   EBBACT00000061859
- GeneID:   3027916
- GeneID:   3101012
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi03811
- KEGG:   bli:BL02430
- NMPDR:   fig|279010.5.peg.3932
- eggNOG:   COG1316
- GeneTree:   EBGT00070000031934
- HOGENOM:   HBG304505
- OMA:   SEDIQIP
- ProtClustDB:   PRK09379
- BioCyc:   BLIC279010-1:BLI03811-MONOMER
- BioCyc:   BLIC279010:BL02430-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_01140
- InterPro:   IPR004474
- TIGRFAMs:   TIGR00350

Pfam domain/function: PF03816 LytR_cpsA_psr

EC number: NA

Molecular weight: Translated: 34554; Mature: 34554

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1203b89c)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAEKRKKKKKILYTIIALIGIFVLSTGSYAYYLWHKAASTVANIHENINKSKKRDSAVD
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCC
IDNHDPFSVLLMGVDERDGDKGRADSLIYMTVNPKTKTTEMVSIPRDTYTEIIGKGKMDK
CCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCEEECCHHHHHHHHCCCCCCC
INHSYAFGGVQMTVDTVENFLDVPVDYFIKVNMESFKDVVDTLGGITVNSTFAFNYDGYS
CCCCEEECCEEEEHHHHHHHHHCCCEEEEEECHHHHHHHHHHHCCEEECCEEEEECCCEE
FGKGEITLNGKEALAYTRMRKEDPNGDFGRQNRQRQVIEGIINKGANISSITKFGDMFKV
ECCCEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
IENNVKTNLTFDDMWDIQSGYKEARSKVIQHELKGDGTKINGIYYYKADESSLSDITAEL
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHHHH
KESLNK
HHHHCH
>Mature Secondary Structure
MRAEKRKKKKKILYTIIALIGIFVLSTGSYAYYLWHKAASTVANIHENINKSKKRDSAVD
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCC
IDNHDPFSVLLMGVDERDGDKGRADSLIYMTVNPKTKTTEMVSIPRDTYTEIIGKGKMDK
CCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCEEECCHHHHHHHHCCCCCCC
INHSYAFGGVQMTVDTVENFLDVPVDYFIKVNMESFKDVVDTLGGITVNSTFAFNYDGYS
CCCCEEECCEEEEHHHHHHHHHCCCEEEEEECHHHHHHHHHHHCCEEECCEEEEECCCEE
FGKGEITLNGKEALAYTRMRKEDPNGDFGRQNRQRQVIEGIINKGANISSITKFGDMFKV
ECCCEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
IENNVKTNLTFDDMWDIQSGYKEARSKVIQHELKGDGTKINGIYYYKADESSLSDITAEL
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHHHH
KESLNK
HHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA