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The map label for this gene is yvpA [H]

Identifier: 52787423

GI number: 52787423

Start: 3563679

End: 3564347

Strand: Direct

Name: yvpA [H]

Synonym: BLi03741

Alternate gene names: 52787423

Gene position: 3563679-3564347 (Clockwise)

Preceding gene: 52787422

Following gene: 52787429

Centisome position: 84.39

GC content: 47.09

Gene sequence:

>669_bases
ATGATGAAGAGATTAGCAGGTACGGTTATTTTGTCAGGTTTGCTCGTATGCGGGTTTGGACAGGCTCTGCCTGAAAAAGC
TTTGGCCGCCGAGGTCGTTCACAAAACGATCGTAGTCGAGAAAGGCCAAACGTATGACGGAAAAGGCAAGCGGCTGATTG
CAGGTCCGGAGCTCGGGGACGGCAGCCAACGCGAGGATCAAAAACCGATTTTCAAAGTGGAGGATGGTGCAACGCTCAAA
AATGTCGTGCTTGGCGCTCCTGCTGCTGATGGTGTTCACACATATGGAAACGCTTCCATAAACAACGTTGTTTGGGAAGA
TGTCGGCGAAGATGCCTTGACTGTCAAAAGCGAAGGAAGTGTCACGATAAACGGAGGATCGGCCCGGCTTGCCGCGGACA
AAATCTTTCAGATTAATAAAGCGAGCACATTTACCGTGAAAAATTTTACTGCCGATCAAGGAGGCAAATTCATTCGCCAG
CTCGGAGGCTCGACATTTAAAGCCGTGGTCAATATTGATAACTGTACGATTACAAACATGAAAGAGGCGATCTTCCGAAC
CGACAGCAGTACAAGTTCCGTTACAATGACAAATACAAGATACTCAAAAGTCGGTCAGAAATGGATCGGTGTGAAGCATG
CTACGGAAAGAAACAATCATGAATTTTAA

Upstream 100 bases:

>100_bases
CCGAAATAGGTGTCTCATTTTATTACATAATGACCAGAAATCACTTTCATTTAAGGGAGACACACACCTGTTTCAAAAAT
ATTTCTTGAGGAGGATGGAA

Downstream 100 bases:

>100_bases
CACTGATTGCAAATAAAGGCCCCCGCTCTTTATTCAGCGGGGGTCTCCAATCTTTTTTCCATTTCTTCTTTTGTATAGAT
CAGCCGCATCGGATTGCCGC

Product: YvpA

Products: NA

Alternate protein names: Pectin lyase [H]

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MMKRLAGTVILSGLLVCGFGQALPEKALAAEVVHKTIVVEKGQTYDGKGKRLIAGPELGDGSQREDQKPIFKVEDGATLK
NVVLGAPAADGVHTYGNASINNVVWEDVGEDALTVKSEGSVTINGGSARLAADKIFQINKASTFTVKNFTADQGGKFIRQ
LGGSTFKAVVNIDNCTITNMKEAIFRTDSSTSSVTMTNTRYSKVGQKWIGVKHATERNNHEF

Sequences:

>Translated_222_residues
MMKRLAGTVILSGLLVCGFGQALPEKALAAEVVHKTIVVEKGQTYDGKGKRLIAGPELGDGSQREDQKPIFKVEDGATLK
NVVLGAPAADGVHTYGNASINNVVWEDVGEDALTVKSEGSVTINGGSARLAADKIFQINKASTFTVKNFTADQGGKFIRQ
LGGSTFKAVVNIDNCTITNMKEAIFRTDSSTSSVTMTNTRYSKVGQKWIGVKHATERNNHEF
>Mature_222_residues
MMKRLAGTVILSGLLVCGFGQALPEKALAAEVVHKTIVVEKGQTYDGKGKRLIAGPELGDGSQREDQKPIFKVEDGATLK
NVVLGAPAADGVHTYGNASINNVVWEDVGEDALTVKSEGSVTINGGSARLAADKIFQINKASTFTVKNFTADQGGKFIRQ
LGGSTFKAVVNIDNCTITNMKEAIFRTDSSTSSVTMTNTRYSKVGQKWIGVKHATERNNHEF

Specific function: Catalyzes the depolymerization of both polygalacturonate and pectins of methyl esterification degree from 22 to 89%, with an endo mode of action. In contrast to the majority of pectate lyases, displays high activity on highly methylated pectins [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide lyase 3 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004898
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF03211 Pectate_lyase [H]

EC number: =4.2.2.2; =4.2.2.10 [H]

Molecular weight: Translated: 23749; Mature: 23749

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKRLAGTVILSGLLVCGFGQALPEKALAAEVVHKTIVVEKGQTYDGKGKRLIAGPELGD
CCHHHHHHHHHHHHHHHCCCHHCHHHHHHHHHHHHHEEEECCCCCCCCCCEEEECCCCCC
GSQREDQKPIFKVEDGATLKNVVLGAPAADGVHTYGNASINNVVWEDVGEDALTVKSEGS
CCCCCCCCCEEEECCCCCCHHEEEECCCCCCCCCCCCCCCCCEECCCCCCCEEEEECCCC
VTINGGSARLAADKIFQINKASTFTVKNFTADQGGKFIRQLGGSTFKAVVNIDNCTITNM
EEEECCCCEEEHHHEEEECCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEECCCCEECCH
KEAIFRTDSSTSSVTMTNTRYSKVGQKWIGVKHATERNNHEF
HHHHEECCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MMKRLAGTVILSGLLVCGFGQALPEKALAAEVVHKTIVVEKGQTYDGKGKRLIAGPELGD
CCHHHHHHHHHHHHHHHCCCHHCHHHHHHHHHHHHHEEEECCCCCCCCCCEEEECCCCCC
GSQREDQKPIFKVEDGATLKNVVLGAPAADGVHTYGNASINNVVWEDVGEDALTVKSEGS
CCCCCCCCCEEEECCCCCCHHEEEECCCCCCCCCCCCCCCCCEECCCCCCCEEEEECCCC
VTINGGSARLAADKIFQINKASTFTVKNFTADQGGKFIRQLGGSTFKAVVNIDNCTITNM
EEEECCCCEEEHHHEEEECCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEECCCCEECCH
KEAIFRTDSSTSSVTMTNTRYSKVGQKWIGVKHATERNNHEF
HHHHEECCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA