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The map label for this gene is ymfN [H]

Identifier: 52787305

GI number: 52787305

Start: 3451338

End: 3453047

Strand: Reverse

Name: ymfN [H]

Synonym: BLi03618

Alternate gene names: 52787305

Gene position: 3453047-3451338 (Counterclockwise)

Preceding gene: 52787306

Following gene: 52787304

Centisome position: 81.77

GC content: 42.46

Gene sequence:

>1710_bases
ATGAATACAATTAAACAGTTTATGATTGATTACTCGCGCGATGTGATATCGGGCGAGATTGTTGCGTGCGAAAAGCATAT
ATGGGCTTGTCAGCGGTTTTTAAATGATATTAAAAGAGAAGGAACAAGAGAGTTTCCTTACGTGTTTGACGATGAAAAAG
CCCGTCGCTTTCTTTACTGGATGACGCAATTCAAACATACAAAAGGGCCATTAGCTGGTGAAAACATAGTTCCAGATCGT
ATTCAAATCTTTATTTTCGGTAATGTTTATGGCTGGATTCATAAAGATACAGGATACCGCCGTTTTACAAAAGTGTATTG
GCAGGTTGGCCGTAAAAATGCAAAGACTCAGAGTCTAGCATGTGTTGCATCCTATGAAGCAATGGCAAACAATGAGAAAA
TGTCTGAAGTTTATATAGGGGCAACAAAGACGGAGCAGGCTCAAATATGTTGGAAGGAGATAAAAGCCCAAATAGAAGGG
TGCGAACTTCTAAACAAACCTGAGCAAAAATACAGGATTGCATACAGCACCATTGAACACCCAAAAACAAATTCAACCAT
CAAAGCTTTATCTAAAGATGCAGGGAAGACCGGTGACGGATTTAACCCGCAATGCGGCATAATCGATGAATATCATGCTC
ATAAAACGTCAGAGATTTACGATATCCTGGAGTCGGGGATGGGCGCAAGAACGCAGCCGATCATGGTTATTATCACGACA
GCGGGGCACGAGTTAAACAATCCGGCCTATCGTGTGGAGTATGATTATGTTTCACGTCTTCTCGATCCAAACAAAGTAGA
GACAAATGAACAGTATTTTGTCATGGTGAACGAAATAGATAAAGACGATGACATAAAGGATGAAAGGAATTGGATAAAGG
CTAATCCGATATTAGCTTCTCATGAAGTTGGGAAAAAATATTTGCGAGATCGTCTTGAAATGGCTCTGGCTGTTCCTGAA
AAGATGAGGGATTTCCTGACCAAGAATATGAATGTTTGGGTTAATATGCGCGACGGTGGATACATGGATATGCAGGCTTG
GAAGGATTGCGGATCTGATCAGTTCCCTGATTTATCCGGCCGTGAGTGCTATGTAGGGATTGACTTGTCAAAACGAATTG
ACCTGACAGCTGTCTCGTTTATTTTCCCATTGGATAATGGGAGCTTTGCTGTGGATAGTCACGGTTTTATGCCTGAAGAT
ACCTTCTATGAGCGCATGAAGACAGATAACGTGCCGTATGATTTGTGGAAGGAAAAGAACTGGTTAACCGTCACCGACGG
CGCTGTTGTCGATTATGACTATATCAGGGCTTACATTAAAAAAATGGAGAAAGAGAAAGGCTGGCGGATCAAAGAAATTG
CCTATGACCCGTATAATGCTACACAGTTTGCCCAACAGATGGAGGCAGACGGATATGTGATGATTGAAATTCGGCAGGGT
GTTGCCACACTTTCAGAGCCTACGAAAGACTTCCGCGAAAAAGTGAAGGCGAAAAAGATCATCCATAATAAAAACGATCT
GCTGACTTGGGCTATGGGGAACGCCGTTACAAAAGTGGATGCCCAGGAAAATATAATGCTGGATAAGTCCAAGTCCACAC
AACGGATTGACCCGGCAGCCGCGCTTATTAATGCACATGTTCGGGCTTCACAAATTGATACGGCGATCGACTTAAACGCT
TATATTCAGTCTGGATCTTTCAGTCTGTAG

Upstream 100 bases:

>100_bases
ATGATTTCGGACTCACACCGTCTGCACGTGCCAAGCTCGCGATCACGAAAACCCAGGAAGAACGGGAGAAGACTTTAGCA
GAAAAGGAGTTTAGTAATGT

Downstream 100 bases:

>100_bases
GGGGTGAGCACTTGAAAATTTTAAAAACCTTACAGCTATTTTTAGAGGATATCTTGCTTATTGCGGGCATGGTATTCATT
TCAATAGCCATATATCGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 569; Mature: 569

Protein sequence:

>569_residues
MNTIKQFMIDYSRDVISGEIVACEKHIWACQRFLNDIKREGTREFPYVFDDEKARRFLYWMTQFKHTKGPLAGENIVPDR
IQIFIFGNVYGWIHKDTGYRRFTKVYWQVGRKNAKTQSLACVASYEAMANNEKMSEVYIGATKTEQAQICWKEIKAQIEG
CELLNKPEQKYRIAYSTIEHPKTNSTIKALSKDAGKTGDGFNPQCGIIDEYHAHKTSEIYDILESGMGARTQPIMVIITT
AGHELNNPAYRVEYDYVSRLLDPNKVETNEQYFVMVNEIDKDDDIKDERNWIKANPILASHEVGKKYLRDRLEMALAVPE
KMRDFLTKNMNVWVNMRDGGYMDMQAWKDCGSDQFPDLSGRECYVGIDLSKRIDLTAVSFIFPLDNGSFAVDSHGFMPED
TFYERMKTDNVPYDLWKEKNWLTVTDGAVVDYDYIRAYIKKMEKEKGWRIKEIAYDPYNATQFAQQMEADGYVMIEIRQG
VATLSEPTKDFREKVKAKKIIHNKNDLLTWAMGNAVTKVDAQENIMLDKSKSTQRIDPAAALINAHVRASQIDTAIDLNA
YIQSGSFSL

Sequences:

>Translated_569_residues
MNTIKQFMIDYSRDVISGEIVACEKHIWACQRFLNDIKREGTREFPYVFDDEKARRFLYWMTQFKHTKGPLAGENIVPDR
IQIFIFGNVYGWIHKDTGYRRFTKVYWQVGRKNAKTQSLACVASYEAMANNEKMSEVYIGATKTEQAQICWKEIKAQIEG
CELLNKPEQKYRIAYSTIEHPKTNSTIKALSKDAGKTGDGFNPQCGIIDEYHAHKTSEIYDILESGMGARTQPIMVIITT
AGHELNNPAYRVEYDYVSRLLDPNKVETNEQYFVMVNEIDKDDDIKDERNWIKANPILASHEVGKKYLRDRLEMALAVPE
KMRDFLTKNMNVWVNMRDGGYMDMQAWKDCGSDQFPDLSGRECYVGIDLSKRIDLTAVSFIFPLDNGSFAVDSHGFMPED
TFYERMKTDNVPYDLWKEKNWLTVTDGAVVDYDYIRAYIKKMEKEKGWRIKEIAYDPYNATQFAQQMEADGYVMIEIRQG
VATLSEPTKDFREKVKAKKIIHNKNDLLTWAMGNAVTKVDAQENIMLDKSKSTQRIDPAAALINAHVRASQIDTAIDLNA
YIQSGSFSL
>Mature_569_residues
MNTIKQFMIDYSRDVISGEIVACEKHIWACQRFLNDIKREGTREFPYVFDDEKARRFLYWMTQFKHTKGPLAGENIVPDR
IQIFIFGNVYGWIHKDTGYRRFTKVYWQVGRKNAKTQSLACVASYEAMANNEKMSEVYIGATKTEQAQICWKEIKAQIEG
CELLNKPEQKYRIAYSTIEHPKTNSTIKALSKDAGKTGDGFNPQCGIIDEYHAHKTSEIYDILESGMGARTQPIMVIITT
AGHELNNPAYRVEYDYVSRLLDPNKVETNEQYFVMVNEIDKDDDIKDERNWIKANPILASHEVGKKYLRDRLEMALAVPE
KMRDFLTKNMNVWVNMRDGGYMDMQAWKDCGSDQFPDLSGRECYVGIDLSKRIDLTAVSFIFPLDNGSFAVDSHGFMPED
TFYERMKTDNVPYDLWKEKNWLTVTDGAVVDYDYIRAYIKKMEKEKGWRIKEIAYDPYNATQFAQQMEADGYVMIEIRQG
VATLSEPTKDFREKVKAKKIIHNKNDLLTWAMGNAVTKVDAQENIMLDKSKSTQRIDPAAALINAHVRASQIDTAIDLNA
YIQSGSFSL

Specific function: Unknown

COG id: COG4626

COG function: function code R; Phage terminase-like protein, large subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage terminase family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR005021
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF03354 Terminase_1 [H]

EC number: NA

Molecular weight: Translated: 65611; Mature: 65611

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTIKQFMIDYSRDVISGEIVACEKHIWACQRFLNDIKREGTREFPYVFDDEKARRFLYW
CCHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHH
MTQFKHTKGPLAGENIVPDRIQIFIFGNVYGWIHKDTGYRRFTKVYWQVGRKNAKTQSLA
HHHHHCCCCCCCCCCCCCCEEEEEEEECEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHH
CVASYEAMANNEKMSEVYIGATKTEQAQICWKEIKAQIEGCELLNKPEQKYRIAYSTIEH
HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEHHCCC
PKTNSTIKALSKDAGKTGDGFNPQCGIIDEYHAHKTSEIYDILESGMGARTQPIMVIITT
CCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCCCEEEEEEE
AGHELNNPAYRVEYDYVSRLLDPNKVETNEQYFVMVNEIDKDDDIKDERNWIKANPILAS
CCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCHHCCEEECCCEEEC
HEVGKKYLRDRLEMALAVPEKMRDFLTKNMNVWVNMRDGGYMDMQAWKDCGSDQFPDLSG
HHHHHHHHHHHHHHHHHCHHHHHHHHHCCCEEEEEECCCCEECHHHHHCCCCCCCCCCCC
RECYVGIDLSKRIDLTAVSFIFPLDNGSFAVDSHGFMPEDTFYERMKTDNVPYDLWKEKN
CEEEEEECCCCCCCEEEEEEEEEECCCCEEECCCCCCCCHHHHHHHHCCCCCHHHHCCCC
WLTVTDGAVVDYDYIRAYIKKMEKEKGWRIKEIAYDPYNATQFAQQMEADGYVMIEIRQG
CEEEECCCEECHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHCCCCEEEEEEECC
VATLSEPTKDFREKVKAKKIIHNKNDLLTWAMGNAVTKVDAQENIMLDKSKSTQRIDPAA
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCEEEECCCCCCCCCHHH
ALINAHVRASQIDTAIDLNAYIQSGSFSL
HHHHHHHHHHHCCCEEEHHHEEECCCCCC
>Mature Secondary Structure
MNTIKQFMIDYSRDVISGEIVACEKHIWACQRFLNDIKREGTREFPYVFDDEKARRFLYW
CCHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHH
MTQFKHTKGPLAGENIVPDRIQIFIFGNVYGWIHKDTGYRRFTKVYWQVGRKNAKTQSLA
HHHHHCCCCCCCCCCCCCCEEEEEEEECEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHH
CVASYEAMANNEKMSEVYIGATKTEQAQICWKEIKAQIEGCELLNKPEQKYRIAYSTIEH
HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEHHCCC
PKTNSTIKALSKDAGKTGDGFNPQCGIIDEYHAHKTSEIYDILESGMGARTQPIMVIITT
CCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCCCEEEEEEE
AGHELNNPAYRVEYDYVSRLLDPNKVETNEQYFVMVNEIDKDDDIKDERNWIKANPILAS
CCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCHHCCEEECCCEEEC
HEVGKKYLRDRLEMALAVPEKMRDFLTKNMNVWVNMRDGGYMDMQAWKDCGSDQFPDLSG
HHHHHHHHHHHHHHHHHCHHHHHHHHHCCCEEEEEECCCCEECHHHHHCCCCCCCCCCCC
RECYVGIDLSKRIDLTAVSFIFPLDNGSFAVDSHGFMPEDTFYERMKTDNVPYDLWKEKN
CEEEEEECCCCCCCEEEEEEEEEECCCCEEECCCCCCCCHHHHHHHHCCCCCHHHHCCCC
WLTVTDGAVVDYDYIRAYIKKMEKEKGWRIKEIAYDPYNATQFAQQMEADGYVMIEIRQG
CEEEECCCEECHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHCCCCEEEEEEECC
VATLSEPTKDFREKVKAKKIIHNKNDLLTWAMGNAVTKVDAQENIMLDKSKSTQRIDPAA
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCEEEECCCCCCCCCHHH
ALINAHVRASQIDTAIDLNAYIQSGSFSL
HHHHHHHHHHHCCCEEEHHHEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]