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The map label for this gene is yulB [H]

Identifier: 52787247

GI number: 52787247

Start: 3402462

End: 3403223

Strand: Reverse

Name: yulB [H]

Synonym: BLi03557

Alternate gene names: 52787247

Gene position: 3403223-3402462 (Counterclockwise)

Preceding gene: 52787248

Following gene: 52787246

Centisome position: 80.59

GC content: 48.43

Gene sequence:

>762_bases
ATGCTTGTAGCTGAAAGACACCAAAAAATCGTCGAGCTTGTCAATCTGCGCTCGAGCGTACGCGTCACAGAACTGAGCGA
GCTTTTTTCCGTCACGGAAGAAACGATCAGGCGCGATTTGGAAAAGCTTGAGAAGGAAAATAAGCTGAAAAGAAGCCATG
GCGGCGCAGTCAGCGTGCAGACTGAAGAAAGAGAGGTGCATTTTCGCGAGCGCGAAATTACAAACGTAAACGAAAAAAAG
ATGATTGCATTTGAAGCCGTCAAGCATGTGAAAAGCGGGGAACGGATTATTCTTGATGCAAGCACGACGGCATGGTACAT
GGCAAAAGCGCTTGAAAACATCCCGCTGACCGTCATTACGAATTCAGTCAGAGTCGCGATTGAACTCAGCAAAAAAGAAA
AGGTGACGGTCATTTCAACCGGCGGGATGCTGCTGCCGCAATCGATGTCATATGTCGGCCCTTTGGCTGAGCGCTCCCTT
GACATGTATCACGTCAACAAAACATTTCTGTCTTGCAAAGGCGTCGACCCTGCGAGCGGCTTGAGCGATTCAAACGAAAT
GCAGGCGCTGTTGAAAAAACGAATGATCGAAATTGCGGACGAAACGATTTTGATGGCGGACAGCAGCAAATTCGGAACCC
GTGCTTTCTCGCAAATCGACCGCCTTCATGACCGATACAGGGTCATCACAGATTCAGGAATTGACAAAGCAAATCTTGCC
CGCTTGAAAGACATAACAGAGAACATCACGATCGTCGGCTGA

Upstream 100 bases:

>100_bases
CTCGGCGCCGCTTCCCGCTGAAAACCTTTCCTGTATCGGAGCCGATGCGCTATCATGAATGTAACAGTGACTTTTACCAA
AAAAGGAAGGAAGTAAACGG

Downstream 100 bases:

>100_bases
AACAAAACTTCTCAAGCACTTGATTTTAAAAACAGGCGCAAATGGGATAAAATAGAAGAGTAAAAAAGGAAAGGAGATGT
TTTTGATGGCGAAAAAGATT

Product: YulB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MLVAERHQKIVELVNLRSSVRVTELSELFSVTEETIRRDLEKLEKENKLKRSHGGAVSVQTEEREVHFREREITNVNEKK
MIAFEAVKHVKSGERIILDASTTAWYMAKALENIPLTVITNSVRVAIELSKKEKVTVISTGGMLLPQSMSYVGPLAERSL
DMYHVNKTFLSCKGVDPASGLSDSNEMQALLKKRMIEIADETILMADSSKFGTRAFSQIDRLHDRYRVITDSGIDKANLA
RLKDITENITIVG

Sequences:

>Translated_253_residues
MLVAERHQKIVELVNLRSSVRVTELSELFSVTEETIRRDLEKLEKENKLKRSHGGAVSVQTEEREVHFREREITNVNEKK
MIAFEAVKHVKSGERIILDASTTAWYMAKALENIPLTVITNSVRVAIELSKKEKVTVISTGGMLLPQSMSYVGPLAERSL
DMYHVNKTFLSCKGVDPASGLSDSNEMQALLKKRMIEIADETILMADSSKFGTRAFSQIDRLHDRYRVITDSGIDKANLA
RLKDITENITIVG
>Mature_253_residues
MLVAERHQKIVELVNLRSSVRVTELSELFSVTEETIRRDLEKLEKENKLKRSHGGAVSVQTEEREVHFREREITNVNEKK
MIAFEAVKHVKSGERIILDASTTAWYMAKALENIPLTVITNSVRVAIELSKKEKVTVISTGGMLLPQSMSYVGPLAERSL
DMYHVNKTFLSCKGVDPASGLSDSNEMQALLKKRMIEIADETILMADSSKFGTRAFSQIDRLHDRYRVITDSGIDKANLA
RLKDITENITIVG

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788069, Length=257, Percent_Identity=39.6887159533074, Blast_Score=144, Evalue=4e-36,
Organism=Escherichia coli, GI1789170, Length=230, Percent_Identity=35.2173913043478, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1789519, Length=253, Percent_Identity=33.9920948616601, Blast_Score=134, Evalue=4e-33,
Organism=Escherichia coli, GI1789059, Length=251, Percent_Identity=33.4661354581673, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787540, Length=240, Percent_Identity=33.3333333333333, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1789829, Length=213, Percent_Identity=31.4553990610329, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI87082344, Length=240, Percent_Identity=28.75, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1790635, Length=227, Percent_Identity=30.3964757709251, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI226510968, Length=241, Percent_Identity=29.8755186721992, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1790753, Length=210, Percent_Identity=29.0476190476191, Blast_Score=91, Evalue=9e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28518; Mature: 28518

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVAERHQKIVELVNLRSSVRVTELSELFSVTEETIRRDLEKLEKENKLKRSHGGAVSVQ
CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
TEEREVHFREREITNVNEKKMIAFEAVKHVKSGERIILDASTTAWYMAKALENIPLTVIT
ECHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCEEEEE
NSVRVAIELSKKEKVTVISTGGMLLPQSMSYVGPLAERSLDMYHVNKTFLSCKGVDPASG
CCEEEEEEECCCCEEEEEECCCEECCCHHHHHCHHHHHCCHHEEECHHEEEECCCCCCCC
LSDSNEMQALLKKRMIEIADETILMADSSKFGTRAFSQIDRLHDRYRVITDSGIDKANLA
CCCHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHEEEECCCCCHHHHH
RLKDITENITIVG
HHHHHHCCEEEEC
>Mature Secondary Structure
MLVAERHQKIVELVNLRSSVRVTELSELFSVTEETIRRDLEKLEKENKLKRSHGGAVSVQ
CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
TEEREVHFREREITNVNEKKMIAFEAVKHVKSGERIILDASTTAWYMAKALENIPLTVIT
ECHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCEEEEE
NSVRVAIELSKKEKVTVISTGGMLLPQSMSYVGPLAERSLDMYHVNKTFLSCKGVDPASG
CCEEEEEEECCCCEEEEEECCCEECCCHHHHHCHHHHHCCHHEEECHHEEEECCCCCCCC
LSDSNEMQALLKKRMIEIADETILMADSSKFGTRAFSQIDRLHDRYRVITDSGIDKANLA
CCCHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHEEEECCCCCHHHHH
RLKDITENITIVG
HHHHHHCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]