Click here to switch to the map view.

The map label for this gene is yaaJ [C]

Identifier: 52787075

GI number: 52787075

Start: 3232641

End: 3234050

Strand: Reverse

Name: yaaJ [C]

Synonym: BLi03380

Alternate gene names: 52787075

Gene position: 3234050-3232641 (Counterclockwise)

Preceding gene: 52787078

Following gene: 52787074

Centisome position: 76.59

GC content: 49.79

Gene sequence:

>1410_bases
TTGGCGATTCTAGAGAAAATCAACGGCTTTTTATGGGGAGTCCCGGGCATCGTTATGCTTGCGGGAACCGGTTTATTTCT
GACGTTCATCCTGCGGGGGCTTCAATTTAAAAGATTGATATATGCATTCAAACTTGCATTCGGGAAAGAAAAAGAATCAG
CCGGAGCAGACGGTGATGTCAGCAATTTCAAGGCGCTGATGACAACGCTTGCCGGAACGATCGGAAATGGAAATATTGCC
GGTGTAGCCACGGCGATTACGGTTGGAGGTCCGGGGGCTTTGTTTTGGATGTGGCTCGTCGGTCTTTTAGGGATGGCTAC
AAAATACAGCGAAGCATTGCTCGCCACGAAATACCGCGTCAAAAATGAGCGGGGCGAATATTCGGGCGGGCCGATGTACT
ATGTCGAAAAAGGGCTCGGGAAGAAGTGGAAGCCGCTTGCCGTTTTATTTGCATTGTCAGGTGTGCTTGCCTCTTTTGGA
ATCGGGGATTCCGTCCAGTCCAACACGATTTCGGAAGTCGTTACACAGAGCTTCGGGATTCCCGGCTGGATCATCGGCCT
TGTGCTCGCGGTATTGACGGCTGCGATCATCTTCGGCGGTTTTCAGCGTGTCAGCACGGTTGCGAGCATTTTTGTGCCGG
TCATGGCGATACTTTATATCGGCGGATCACTGATCATTATTTTCCTTCATTATGATCAAATCATTCCGGCGTTCCAGCTG
ATTTTTTATCACGCCTTCAACCCGGTGTCAGCCGCGGGGGGCTTTACTGGCGTGGTCGTCTCTGAGGCGATCAGAAACGG
AATGTCGAAAGGAATCTTTTCAAATGAAGCTGGTCTTGGTACCGCTGCTTTAATCGCAGGAAACGCGAAATCCGATCACC
CCGTCAAGGCCGCTTTGGTTGCGATGACGGGAACTTTCATCGTTACATTGATCGTTTGTACGATGACGGGGCTTGTCCTC
ATTATCACGGGATTCTGGGATCCTTCAGGCGGTCTGCTTTCTGGTGTTGCCCACGATGCATCGCTTGATGCCGGCGCGCT
GACAAACGCCGCGTTTGCTTCTTCGCTGGGAGCCGCGGGCAAATACATCGTCACGTTTTCGGTGATTTTCTTTGGCTACT
CAACCATTGTCGGTTGGTATGTATATGGAGAAAAATGTCTGGAATATTTAGTTGGTTTAAAATGGGTGCCGCTTTATCGT
GTCGTTTATGTCATTGCTGCATATTACGGTGCAGTCGCAAGCCTGAATACTGTATGGGCTTTTGCCGACGCGGCAAACGC
ATTAATGATGATCCCGAACTTGATCGCCCTTGTGCTCTTATGGAAAGTCATTCGGGCGGAAACTGACGATTTCTTTTTGC
ACCACTATAATAAGGAAAAACAAAAGTCAGCCGGCTTGAAAGCGGGCTGA

Upstream 100 bases:

>100_bases
TAAAATCAACAAAAAAGTCGCTGGTGATTTATTATTTTTCATAAACACGGCGATGTATTAAACCAAATTTAATTATTCTG
AAATAAGAGGAGTAGGAACA

Downstream 100 bases:

>100_bases
TCAAGACAAGCCTGCCTCTAAGAGAGGCGGGCTTTTTTGCGCATAGGCAATCCTTCCTTTATCCTATGGAAACGCTTTAG
TCTCAGATAGTCACATTGAA

Product: hypothetical protein

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 468

Protein sequence:

>469_residues
MAILEKINGFLWGVPGIVMLAGTGLFLTFILRGLQFKRLIYAFKLAFGKEKESAGADGDVSNFKALMTTLAGTIGNGNIA
GVATAITVGGPGALFWMWLVGLLGMATKYSEALLATKYRVKNERGEYSGGPMYYVEKGLGKKWKPLAVLFALSGVLASFG
IGDSVQSNTISEVVTQSFGIPGWIIGLVLAVLTAAIIFGGFQRVSTVASIFVPVMAILYIGGSLIIIFLHYDQIIPAFQL
IFYHAFNPVSAAGGFTGVVVSEAIRNGMSKGIFSNEAGLGTAALIAGNAKSDHPVKAALVAMTGTFIVTLIVCTMTGLVL
IITGFWDPSGGLLSGVAHDASLDAGALTNAAFASSLGAAGKYIVTFSVIFFGYSTIVGWYVYGEKCLEYLVGLKWVPLYR
VVYVIAAYYGAVASLNTVWAFADAANALMMIPNLIALVLLWKVIRAETDDFFLHHYNKEKQKSAGLKAG

Sequences:

>Translated_469_residues
MAILEKINGFLWGVPGIVMLAGTGLFLTFILRGLQFKRLIYAFKLAFGKEKESAGADGDVSNFKALMTTLAGTIGNGNIA
GVATAITVGGPGALFWMWLVGLLGMATKYSEALLATKYRVKNERGEYSGGPMYYVEKGLGKKWKPLAVLFALSGVLASFG
IGDSVQSNTISEVVTQSFGIPGWIIGLVLAVLTAAIIFGGFQRVSTVASIFVPVMAILYIGGSLIIIFLHYDQIIPAFQL
IFYHAFNPVSAAGGFTGVVVSEAIRNGMSKGIFSNEAGLGTAALIAGNAKSDHPVKAALVAMTGTFIVTLIVCTMTGLVL
IITGFWDPSGGLLSGVAHDASLDAGALTNAAFASSLGAAGKYIVTFSVIFFGYSTIVGWYVYGEKCLEYLVGLKWVPLYR
VVYVIAAYYGAVASLNTVWAFADAANALMMIPNLIALVLLWKVIRAETDDFFLHHYNKEKQKSAGLKAG
>Mature_468_residues
AILEKINGFLWGVPGIVMLAGTGLFLTFILRGLQFKRLIYAFKLAFGKEKESAGADGDVSNFKALMTTLAGTIGNGNIAG
VATAITVGGPGALFWMWLVGLLGMATKYSEALLATKYRVKNERGEYSGGPMYYVEKGLGKKWKPLAVLFALSGVLASFGI
GDSVQSNTISEVVTQSFGIPGWIIGLVLAVLTAAIIFGGFQRVSTVASIFVPVMAILYIGGSLIIIFLHYDQIIPAFQLI
FYHAFNPVSAAGGFTGVVVSEAIRNGMSKGIFSNEAGLGTAALIAGNAKSDHPVKAALVAMTGTFIVTLIVCTMTGLVLI
ITGFWDPSGGLLSGVAHDASLDAGALTNAAFASSLGAAGKYIVTFSVIFFGYSTIVGWYVYGEKCLEYLVGLKWVPLYRV
VYVIAAYYGAVASLNTVWAFADAANALMMIPNLIALVLLWKVIRAETDDFFLHHYNKEKQKSAGLKAG

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=467, Percent_Identity=35.117773019272, Blast_Score=235, Evalue=4e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 49728; Mature: 49597

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAILEKINGFLWGVPGIVMLAGTGLFLTFILRGLQFKRLIYAFKLAFGKEKESAGADGDV
CCHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
SNFKALMTTLAGTIGNGNIAGVATAITVGGPGALFWMWLVGLLGMATKYSEALLATKYRV
HHHHHHHHHHHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNERGEYSGGPMYYVEKGLGKKWKPLAVLFALSGVLASFGIGDSVQSNTISEVVTQSFGI
HCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
PGWIIGLVLAVLTAAIIFGGFQRVSTVASIFVPVMAILYIGGSLIIIFLHYDQIIPAFQL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHH
IFYHAFNPVSAAGGFTGVVVSEAIRNGMSKGIFSNEAGLGTAALIAGNAKSDHPVKAALV
HHHHHCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHHH
AMTGTFIVTLIVCTMTGLVLIITGFWDPSGGLLSGVAHDASLDAGALTNAAFASSLGAAG
HHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
KYIVTFSVIFFGYSTIVGWYVYGEKCLEYLVGLKWVPLYRVVYVIAAYYGAVASLNTVWA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FADAANALMMIPNLIALVLLWKVIRAETDDFFLHHYNKEKQKSAGLKAG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHCCCCCCC
>Mature Secondary Structure 
AILEKINGFLWGVPGIVMLAGTGLFLTFILRGLQFKRLIYAFKLAFGKEKESAGADGDV
CHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
SNFKALMTTLAGTIGNGNIAGVATAITVGGPGALFWMWLVGLLGMATKYSEALLATKYRV
HHHHHHHHHHHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNERGEYSGGPMYYVEKGLGKKWKPLAVLFALSGVLASFGIGDSVQSNTISEVVTQSFGI
HCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
PGWIIGLVLAVLTAAIIFGGFQRVSTVASIFVPVMAILYIGGSLIIIFLHYDQIIPAFQL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHH
IFYHAFNPVSAAGGFTGVVVSEAIRNGMSKGIFSNEAGLGTAALIAGNAKSDHPVKAALV
HHHHHCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHHH
AMTGTFIVTLIVCTMTGLVLIITGFWDPSGGLLSGVAHDASLDAGALTNAAFASSLGAAG
HHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
KYIVTFSVIFFGYSTIVGWYVYGEKCLEYLVGLKWVPLYRVVYVIAAYYGAVASLNTVWA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FADAANALMMIPNLIALVLLWKVIRAETDDFFLHHYNKEKQKSAGLKAG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]