Click here to switch to the map view.

The map label for this gene is yfiR

Identifier: 52787000

GI number: 52787000

Start: 3167541

End: 3168131

Strand: Direct

Name: yfiR

Synonym: BLi03302

Alternate gene names: NA

Gene position: 3167541-3168131 (Clockwise)

Preceding gene: 52786996

Following gene: 52787001

Centisome position: 75.01

GC content: 35.87

Gene sequence:

>591_bases
ATGAAAAAGAAAATGAACACCCAAGATGCGATTGTTGAAGCAGCATTTACTCTTATTGCCCGACACGGCCTAAAAGGCAC
GAGCCTTTCAATGATTGCATCGGAAGTCGGCATTTCTAAACCGGCTATTTACTATTATTTCCCTTCTAAAGAAGAGCTTA
TCGATTATCTATTTCACATCGTATTTGATGATCACAATTTCTCTGAATATTTTTCAATCAATAAGTACACGAAGGAGAAC
TTTAAAAAACGATTAATAACAGACGGCGTACGCTATTTTGAAGAGTATAAACATAACTCTCCTGCTTTAAAAGTGGTACA
CGAGTTTGTTTTAAGTGCAGCACAAAAACCAAGATATGAGAAAAAGCTTAAATCTATCATGGAACAATTCTTAGAAGGTT
TTGAAGCATTGCTTTCCTACGGTGTCGAACTCGGTGTCATCTCTTCTAAAAACACCAAAGTGAATGCACACTCCCTTGCC
CTGATCATTGATAATTTGGGTAACTTTATGATTTTAGGAATTGAGATGGATTATAAAAAAGTATGGGAAACAGCAGTCAG
TAATGTAATGAAAGGCAGTGAAAGATTTTGA

Upstream 100 bases:

>100_bases
AGCATCTGTTAATACAGAATATGTAAAGCATAAATTACAGTTGCTTTTTTACCTATCGGTAAGTAAAATAAATATATAGA
TTATGCTAAGGATGATTTCA

Downstream 100 bases:

>100_bases
ATCAGGAAACGATTATTGGATTGTCTAAAATAGAGAAAACCTTATATTGGATCATTCCACCGGTTTTAGGAGCTGTTCTT
GGATGGTTTTTGCCTGTTAT

Product: YfiR

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator; Transcriptional Regulator; Transcriptional Regulator YfiR

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MKKKMNTQDAIVEAAFTLIARHGLKGTSLSMIASEVGISKPAIYYYFPSKEELIDYLFHIVFDDHNFSEYFSINKYTKEN
FKKRLITDGVRYFEEYKHNSPALKVVHEFVLSAAQKPRYEKKLKSIMEQFLEGFEALLSYGVELGVISSKNTKVNAHSLA
LIIDNLGNFMILGIEMDYKKVWETAVSNVMKGSERF

Sequences:

>Translated_196_residues
MKKKMNTQDAIVEAAFTLIARHGLKGTSLSMIASEVGISKPAIYYYFPSKEELIDYLFHIVFDDHNFSEYFSINKYTKEN
FKKRLITDGVRYFEEYKHNSPALKVVHEFVLSAAQKPRYEKKLKSIMEQFLEGFEALLSYGVELGVISSKNTKVNAHSLA
LIIDNLGNFMILGIEMDYKKVWETAVSNVMKGSERF
>Mature_196_residues
MKKKMNTQDAIVEAAFTLIARHGLKGTSLSMIASEVGISKPAIYYYFPSKEELIDYLFHIVFDDHNFSEYFSINKYTKEN
FKKRLITDGVRYFEEYKHNSPALKVVHEFVLSAAQKPRYEKKLKSIMEQFLEGFEALLSYGVELGVISSKNTKVNAHSLA
LIIDNLGNFMILGIEMDYKKVWETAVSNVMKGSERF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22546; Mature: 22546

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKMNTQDAIVEAAFTLIARHGLKGTSLSMIASEVGISKPAIYYYFPSKEELIDYLFHI
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHH
VFDDHNFSEYFSINKYTKENFKKRLITDGVRYFEEYKHNSPALKVVHEFVLSAAQKPRYE
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHH
KKLKSIMEQFLEGFEALLSYGVELGVISSKNTKVNAHSLALIIDNLGNFMILGIEMDYKK
HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEECHHHHHHHHCCCCCEEEEEEECCHHH
VWETAVSNVMKGSERF
HHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKKKMNTQDAIVEAAFTLIARHGLKGTSLSMIASEVGISKPAIYYYFPSKEELIDYLFHI
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHH
VFDDHNFSEYFSINKYTKENFKKRLITDGVRYFEEYKHNSPALKVVHEFVLSAAQKPRYE
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHH
KKLKSIMEQFLEGFEALLSYGVELGVISSKNTKVNAHSLALIIDNLGNFMILGIEMDYKK
HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEECHHHHHHHHCCCCCEEEEEEECCHHH
VWETAVSNVMKGSERF
HHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA